Results 61 - 67 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14179 | 3' | -51.9 | NC_003521.1 | + | 198742 | 0.66 | 0.993029 |
Target: 5'- cAGAcgAGGUCuUGCCGuGCUcGCUGGuCGCGc -3' miRNA: 3'- -UCU--UCUAG-ACGGU-CGA-CGACUuGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 119235 | 0.66 | 0.993029 |
Target: 5'- cAGcuGGUgUGCUcGCUGgaGAACACGc -3' miRNA: 3'- -UCuuCUAgACGGuCGACgaCUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 40802 | 0.66 | 0.993029 |
Target: 5'- -cAGGcUCUGCCAGC-GUUGAGuCACa -3' miRNA: 3'- ucUUCuAGACGGUCGaCGACUU-GUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 213769 | 0.66 | 0.995498 |
Target: 5'- uAGAAGAUg-GCCAGC-GCguaGACGCGc -3' miRNA: 3'- -UCUUCUAgaCGGUCGaCGac-UUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 27214 | 0.66 | 0.99477 |
Target: 5'- aGGAAGGcgauggucuucuUCUGCUGGUcggGCgaGAGCACGg -3' miRNA: 3'- -UCUUCU------------AGACGGUCGa--CGa-CUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 64010 | 0.66 | 0.99477 |
Target: 5'- uAGAGGAgCUGCaGGC-GCUGgAGCGCa -3' miRNA: 3'- -UCUUCUaGACGgUCGaCGAC-UUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 211224 | 0.66 | 0.996141 |
Target: 5'- uGAAGGUCUugGUCAGCagGCUGuugggaauACACa -3' miRNA: 3'- uCUUCUAGA--CGGUCGa-CGACu-------UGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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