miRNA display CGI


Results 41 - 60 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 129702 0.67 0.985966
Target:  5'- cGAGGAcgcccgcuUCUGCCGGCcGCggcccgucgacgcGAGCGCGu -3'
miRNA:   3'- uCUUCU--------AGACGGUCGaCGa------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 130092 0.69 0.964905
Target:  5'- gAGuGGAaCUGCCAGCUGCcGGGC-Cu -3'
miRNA:   3'- -UCuUCUaGACGGUCGACGaCUUGuGc -5'
14179 3' -51.9 NC_003521.1 + 130231 0.68 0.98104
Target:  5'- uGGAGAUCgGCC-GCgUGCUGGGCGu- -3'
miRNA:   3'- uCUUCUAGaCGGuCG-ACGACUUGUgc -5'
14179 3' -51.9 NC_003521.1 + 137171 0.71 0.908386
Target:  5'- cGGAGg---GCCAgguGCUGCUGAGCAUGg -3'
miRNA:   3'- uCUUCuagaCGGU---CGACGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 138380 0.66 0.99395
Target:  5'- -cGAGAUCUGCCgcGGCcUGCg--GCGCGu -3'
miRNA:   3'- ucUUCUAGACGG--UCG-ACGacuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 144094 0.67 0.990854
Target:  5'- --uGGGcuUCUGCCucaugcGGCUGCUGGACcgccGCGg -3'
miRNA:   3'- ucuUCU--AGACGG------UCGACGACUUG----UGC- -5'
14179 3' -51.9 NC_003521.1 + 144749 0.68 0.973868
Target:  5'- cGAGGAgCUGacCCGGCUGCUGGcgguCugGg -3'
miRNA:   3'- uCUUCUaGAC--GGUCGACGACUu---GugC- -5'
14179 3' -51.9 NC_003521.1 + 145135 0.68 0.983068
Target:  5'- uGGAGcUCUuUCAGCUGCUGGagaaggagucGCGCGg -3'
miRNA:   3'- uCUUCuAGAcGGUCGACGACU----------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 148450 0.68 0.98104
Target:  5'- cAGggGug--GCCGGUgcgUGCUGAugACGa -3'
miRNA:   3'- -UCuuCuagaCGGUCG---ACGACUugUGC- -5'
14179 3' -51.9 NC_003521.1 + 155391 0.66 0.99477
Target:  5'- cGGAcGA-CgagGCCGGCgggggGCUGGGCACc -3'
miRNA:   3'- -UCUuCUaGa--CGGUCGa----CGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 156139 0.7 0.94096
Target:  5'- uGGAGGUgUGCacgCAGCUGCUG-GCGCu -3'
miRNA:   3'- uCUUCUAgACG---GUCGACGACuUGUGc -5'
14179 3' -51.9 NC_003521.1 + 161888 0.67 0.992
Target:  5'- cAGaAAGAUCgGCgAGUaccUGCUGgAGCGCGg -3'
miRNA:   3'- -UC-UUCUAGaCGgUCG---ACGAC-UUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 162587 0.68 0.978836
Target:  5'- -----cUCUGCCGGCUGCgguGGCACu -3'
miRNA:   3'- ucuucuAGACGGUCGACGac-UUGUGc -5'
14179 3' -51.9 NC_003521.1 + 167359 0.72 0.874646
Target:  5'- aAGAcGAUCga-CAGCUGCUGggUACa -3'
miRNA:   3'- -UCUuCUAGacgGUCGACGACuuGUGc -5'
14179 3' -51.9 NC_003521.1 + 168513 0.67 0.988176
Target:  5'- cGGAGGAcggCgacGCCAGCagGCUGGcggccaGCGCGg -3'
miRNA:   3'- -UCUUCUa--Ga--CGGUCGa-CGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168526 0.67 0.988176
Target:  5'- ---cGAUCUGCU-GCUGCccucgcUGGACGCGc -3'
miRNA:   3'- ucuuCUAGACGGuCGACG------ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 179592 0.68 0.984928
Target:  5'- uGAAGuucugcaggCUGCC-GCUGCUGcuGCGCGu -3'
miRNA:   3'- uCUUCua-------GACGGuCGACGACu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 187062 0.7 0.94096
Target:  5'- gGGAAGGg-UGCCAGCgaGCggaGGGCGCGg -3'
miRNA:   3'- -UCUUCUagACGGUCGa-CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 193159 0.71 0.908386
Target:  5'- cGGggGcGUCUGCU-GCUGCUGuuGCGCa -3'
miRNA:   3'- -UCuuC-UAGACGGuCGACGACu-UGUGc -5'
14179 3' -51.9 NC_003521.1 + 195681 0.7 0.949876
Target:  5'- uAGAAGAUCUGCgGGaugucCUGCcgGuGCACGa -3'
miRNA:   3'- -UCUUCUAGACGgUC-----GACGa-CuUGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.