Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14179 | 3' | -51.9 | NC_003521.1 | + | 144749 | 0.68 | 0.973868 |
Target: 5'- cGAGGAgCUGacCCGGCUGCUGGcgguCugGg -3' miRNA: 3'- uCUUCUaGAC--GGUCGACGACUu---GugC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 144094 | 0.67 | 0.990854 |
Target: 5'- --uGGGcuUCUGCCucaugcGGCUGCUGGACcgccGCGg -3' miRNA: 3'- ucuUCU--AGACGG------UCGACGACUUG----UGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 138380 | 0.66 | 0.99395 |
Target: 5'- -cGAGAUCUGCCgcGGCcUGCg--GCGCGu -3' miRNA: 3'- ucUUCUAGACGG--UCG-ACGacuUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 137171 | 0.71 | 0.908386 |
Target: 5'- cGGAGg---GCCAgguGCUGCUGAGCAUGg -3' miRNA: 3'- uCUUCuagaCGGU---CGACGACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 130231 | 0.68 | 0.98104 |
Target: 5'- uGGAGAUCgGCC-GCgUGCUGGGCGu- -3' miRNA: 3'- uCUUCUAGaCGGuCG-ACGACUUGUgc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 130092 | 0.69 | 0.964905 |
Target: 5'- gAGuGGAaCUGCCAGCUGCcGGGC-Cu -3' miRNA: 3'- -UCuUCUaGACGGUCGACGaCUUGuGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 129702 | 0.67 | 0.985966 |
Target: 5'- cGAGGAcgcccgcuUCUGCCGGCcGCggcccgucgacgcGAGCGCGu -3' miRNA: 3'- uCUUCU--------AGACGGUCGaCGa------------CUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 123682 | 0.69 | 0.967793 |
Target: 5'- uGGccAUCUgcGCCAGCUGCUGGucgaucaucgagcGCACGa -3' miRNA: 3'- uCUucUAGA--CGGUCGACGACU-------------UGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 122117 | 0.67 | 0.986627 |
Target: 5'- cAGcGGcGUCUcGCC-GCgGCUGAACACGg -3' miRNA: 3'- -UCuUC-UAGA-CGGuCGaCGACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 119763 | 0.68 | 0.978836 |
Target: 5'- uGAAGAUCUGCUcggccuccaGGCUGCgGucCACc -3' miRNA: 3'- uCUUCUAGACGG---------UCGACGaCuuGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 119235 | 0.66 | 0.993029 |
Target: 5'- cAGcuGGUgUGCUcGCUGgaGAACACGc -3' miRNA: 3'- -UCuuCUAgACGGuCGACgaCUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 118182 | 0.68 | 0.98104 |
Target: 5'- -cAGGAccugCUGCCcaugcGGCUGUUGAGCGCc -3' miRNA: 3'- ucUUCUa---GACGG-----UCGACGACUUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 116303 | 0.67 | 0.989174 |
Target: 5'- uGGAGGAcagcuccaugCUGCUcgucaagugccaagAGCUGCUG-ACGCGg -3' miRNA: 3'- -UCUUCUa---------GACGG--------------UCGACGACuUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 116062 | 0.7 | 0.949876 |
Target: 5'- cAGGAGAUCaaCCagcGGCUGCUGAuCAUGg -3' miRNA: 3'- -UCUUCUAGacGG---UCGACGACUuGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 114750 | 0.67 | 0.989582 |
Target: 5'- uGGggGuggCgcgGCCacAGC-GCUGGACACGg -3' miRNA: 3'- -UCuuCua-Ga--CGG--UCGaCGACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 111758 | 0.68 | 0.984928 |
Target: 5'- cGAGGGUCUgcGCCAGCU-CaGGGCGCc -3' miRNA: 3'- uCUUCUAGA--CGGUCGAcGaCUUGUGc -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 110446 | 0.68 | 0.98104 |
Target: 5'- aAGAA-AUC-GCCGGUggcGCUGAGCGCGc -3' miRNA: 3'- -UCUUcUAGaCGGUCGa--CGACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 108818 | 0.67 | 0.987265 |
Target: 5'- aGGAacgGGAUCUgguacgaauugcgcaGCucCAGCUGCgUGAACACGc -3' miRNA: 3'- -UCU---UCUAGA---------------CG--GUCGACG-ACUUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 101461 | 0.67 | 0.992 |
Target: 5'- cGgcGcUCUucGCCAGCUGCUacAACACGa -3' miRNA: 3'- uCuuCuAGA--CGGUCGACGAc-UUGUGC- -5' |
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14179 | 3' | -51.9 | NC_003521.1 | + | 100801 | 0.67 | 0.989582 |
Target: 5'- aAGAGGGUC-GCCugGGCUGCgacugUGAuuguuGCGCGg -3' miRNA: 3'- -UCUUCUAGaCGG--UCGACG-----ACU-----UGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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