miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14179 3' -51.9 NC_003521.1 + 86390 0.67 0.989582
Target:  5'- gGGAAGAaggGCCAGCggucgacGCgggGGACGCGc -3'
miRNA:   3'- -UCUUCUagaCGGUCGa------CGa--CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 100801 0.67 0.989582
Target:  5'- aAGAGGGUC-GCCugGGCUGCgacugUGAuuguuGCGCGg -3'
miRNA:   3'- -UCUUCUAGaCGG--UCGACG-----ACU-----UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 116303 0.67 0.989174
Target:  5'- uGGAGGAcagcuccaugCUGCUcgucaagugccaagAGCUGCUG-ACGCGg -3'
miRNA:   3'- -UCUUCUa---------GACGG--------------UCGACGACuUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168513 0.67 0.988176
Target:  5'- cGGAGGAcggCgacGCCAGCagGCUGGcggccaGCGCGg -3'
miRNA:   3'- -UCUUCUa--Ga--CGGUCGa-CGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 168526 0.67 0.988176
Target:  5'- ---cGAUCUGCU-GCUGCccucgcUGGACGCGc -3'
miRNA:   3'- ucuuCUAGACGGuCGACG------ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 108818 0.67 0.987265
Target:  5'- aGGAacgGGAUCUgguacgaauugcgcaGCucCAGCUGCgUGAACACGc -3'
miRNA:   3'- -UCU---UCUAGA---------------CG--GUCGACG-ACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 29690 0.67 0.987265
Target:  5'- uGGAGGAugauccgcugcguccUCggcGCCuGGCUGCUGAgccucgGCGCGa -3'
miRNA:   3'- -UCUUCU---------------AGa--CGG-UCGACGACU------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 122117 0.67 0.986627
Target:  5'- cAGcGGcGUCUcGCC-GCgGCUGAACACGg -3'
miRNA:   3'- -UCuUC-UAGA-CGGuCGaCGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 59363 0.67 0.986627
Target:  5'- aGGcGGcgC-GCCAGCcGCUGGACGCc -3'
miRNA:   3'- -UCuUCuaGaCGGUCGaCGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 74635 0.67 0.986627
Target:  5'- aAGGAGuUCUGCCuGCgucacggGCUGAACc-- -3'
miRNA:   3'- -UCUUCuAGACGGuCGa------CGACUUGugc -5'
14179 3' -51.9 NC_003521.1 + 44716 0.67 0.986627
Target:  5'- cGGcGGAUCUauaccgcgcGCCGcauuucguGCUGCUGGACGCc -3'
miRNA:   3'- -UCuUCUAGA---------CGGU--------CGACGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 129702 0.67 0.985966
Target:  5'- cGAGGAcgcccgcuUCUGCCGGCcGCggcccgucgacgcGAGCGCGu -3'
miRNA:   3'- uCUUCU--------AGACGGUCGaCGa------------CUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 111758 0.68 0.984928
Target:  5'- cGAGGGUCUgcGCCAGCU-CaGGGCGCc -3'
miRNA:   3'- uCUUCUAGA--CGGUCGAcGaCUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 179592 0.68 0.984928
Target:  5'- uGAAGuucugcaggCUGCC-GCUGCUGcuGCGCGu -3'
miRNA:   3'- uCUUCua-------GACGGuCGACGACu-UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 145135 0.68 0.983068
Target:  5'- uGGAGcUCUuUCAGCUGCUGGagaaggagucGCGCGg -3'
miRNA:   3'- uCUUCuAGAcGGUCGACGACU----------UGUGC- -5'
14179 3' -51.9 NC_003521.1 + 110446 0.68 0.98104
Target:  5'- aAGAA-AUC-GCCGGUggcGCUGAGCGCGc -3'
miRNA:   3'- -UCUUcUAGaCGGUCGa--CGACUUGUGC- -5'
14179 3' -51.9 NC_003521.1 + 148450 0.68 0.98104
Target:  5'- cAGggGug--GCCGGUgcgUGCUGAugACGa -3'
miRNA:   3'- -UCuuCuagaCGGUCG---ACGACUugUGC- -5'
14179 3' -51.9 NC_003521.1 + 130231 0.68 0.98104
Target:  5'- uGGAGAUCgGCC-GCgUGCUGGGCGu- -3'
miRNA:   3'- uCUUCUAGaCGGuCG-ACGACUUGUgc -5'
14179 3' -51.9 NC_003521.1 + 118182 0.68 0.98104
Target:  5'- -cAGGAccugCUGCCcaugcGGCUGUUGAGCGCc -3'
miRNA:   3'- ucUUCUa---GACGG-----UCGACGACUUGUGc -5'
14179 3' -51.9 NC_003521.1 + 162587 0.68 0.978836
Target:  5'- -----cUCUGCCGGCUGCgguGGCACu -3'
miRNA:   3'- ucuucuAGACGGUCGACGac-UUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.