miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1418 3' -54.3 NC_001335.1 + 28927 0.66 0.783014
Target:  5'- --aUGUCCGCGAGcugucacCGGCAGCcgccGGCc -3'
miRNA:   3'- guaGCAGGCGUUCuu-----GCUGUCGc---CCG- -5'
1418 3' -54.3 NC_001335.1 + 11439 0.66 0.772964
Target:  5'- gGUCGUUcaCGCcgAGGAACGGC-GUGGuGCg -3'
miRNA:   3'- gUAGCAG--GCG--UUCUUGCUGuCGCC-CG- -5'
1418 3' -54.3 NC_001335.1 + 6921 0.66 0.772964
Target:  5'- aCAUCuaCCGCGAGGGCGugAuccGCcGGCu -3'
miRNA:   3'- -GUAGcaGGCGUUCUUGCugU---CGcCCG- -5'
1418 3' -54.3 NC_001335.1 + 13380 0.66 0.752435
Target:  5'- gAUCGagUgGCGAGAcCaGCGGUGGGCg -3'
miRNA:   3'- gUAGCa-GgCGUUCUuGcUGUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 24904 0.66 0.750353
Target:  5'- uCAUCa-CCGCccgGAGGACGuuguaggcaugcCGGCGGGCa -3'
miRNA:   3'- -GUAGcaGGCG---UUCUUGCu-----------GUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 43061 0.66 0.741978
Target:  5'- aAUCGgucaggUCGUAGG-GCG-CAGUGGGCu -3'
miRNA:   3'- gUAGCa-----GGCGUUCuUGCuGUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 2314 0.67 0.73141
Target:  5'- gCGagGUCgGCAAGGA-GugAGCuGGGCc -3'
miRNA:   3'- -GUagCAGgCGUUCUUgCugUCG-CCCG- -5'
1418 3' -54.3 NC_001335.1 + 10239 0.67 0.72502
Target:  5'- uCAUCGgcgCUGuCAAGAACGAucCGGCcccgcagaucgugcaGGGCu -3'
miRNA:   3'- -GUAGCa--GGC-GUUCUUGCU--GUCG---------------CCCG- -5'
1418 3' -54.3 NC_001335.1 + 29314 0.67 0.709983
Target:  5'- gCAUCG-CCGCAcGAuccaguccgacgACGGCAGCGucuGCg -3'
miRNA:   3'- -GUAGCaGGCGUuCU------------UGCUGUCGCc--CG- -5'
1418 3' -54.3 NC_001335.1 + 15632 0.67 0.709983
Target:  5'- --aUGUCCGCGAGcGCG-UAGCGGu- -3'
miRNA:   3'- guaGCAGGCGUUCuUGCuGUCGCCcg -5'
1418 3' -54.3 NC_001335.1 + 26694 0.67 0.709983
Target:  5'- --cCGUCCGCAAcuacaucgcCGACGGCcGGCu -3'
miRNA:   3'- guaGCAGGCGUUcuu------GCUGUCGcCCG- -5'
1418 3' -54.3 NC_001335.1 + 41875 0.67 0.709983
Target:  5'- --cCGggugCCGCuguacGGGGACGcUGGCGGGCa -3'
miRNA:   3'- guaGCa---GGCG-----UUCUUGCuGUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 44701 0.67 0.699148
Target:  5'- gAUCGUCCaGC-AGAACuGGCcGUGGGa -3'
miRNA:   3'- gUAGCAGG-CGuUCUUG-CUGuCGCCCg -5'
1418 3' -54.3 NC_001335.1 + 25772 0.67 0.677292
Target:  5'- -cUCGUCUGUucGcGCaGGCGGgGGGCu -3'
miRNA:   3'- guAGCAGGCGuuCuUG-CUGUCgCCCG- -5'
1418 3' -54.3 NC_001335.1 + 42695 0.68 0.666293
Target:  5'- -cUCGUCCGgGAuGACGcACGGCcuccgcuuGGGCa -3'
miRNA:   3'- guAGCAGGCgUUcUUGC-UGUCG--------CCCG- -5'
1418 3' -54.3 NC_001335.1 + 2245 0.68 0.633146
Target:  5'- cCGUCGaggucUCCGaCGAGAAgcucgcCGAagccCAGCGGGCc -3'
miRNA:   3'- -GUAGC-----AGGC-GUUCUU------GCU----GUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 20232 0.69 0.571443
Target:  5'- -uUCGUCCGaGGGAugguccaacuggccgGCGACGGCcaggucgaGGGCg -3'
miRNA:   3'- guAGCAGGCgUUCU---------------UGCUGUCG--------CCCG- -5'
1418 3' -54.3 NC_001335.1 + 50751 0.69 0.567078
Target:  5'- aGUCGUCgGcCGGGGGCGGCGcaccuUGGGCg -3'
miRNA:   3'- gUAGCAGgC-GUUCUUGCUGUc----GCCCG- -5'
1418 3' -54.3 NC_001335.1 + 4588 0.69 0.556204
Target:  5'- aGUCacCCGCGAGAgaGCG-CAGUGGGUc -3'
miRNA:   3'- gUAGcaGGCGUUCU--UGCuGUCGCCCG- -5'
1418 3' -54.3 NC_001335.1 + 27217 0.71 0.471989
Target:  5'- --cUGUCCGCcuguGAGGGCGGCA-CGGGUu -3'
miRNA:   3'- guaGCAGGCG----UUCUUGCUGUcGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.