miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1418 5' -59.9 NC_001335.1 + 15975 0.66 0.460247
Target:  5'- cGAAGCUGCCaaggGCGUucacgucCCGGUCGaCGUa- -3'
miRNA:   3'- -CUUCGAUGG----CGCA-------GGCCAGCgGCGca -5'
1418 5' -59.9 NC_001335.1 + 38276 0.66 0.451578
Target:  5'- cGggGCUGCCugGCGauUCCguauaugcgguGGUCGCCcugGCGUc -3'
miRNA:   3'- -CuuCGAUGG--CGC--AGG-----------CCAGCGG---CGCA- -5'
1418 5' -59.9 NC_001335.1 + 18541 0.68 0.361803
Target:  5'- cGAAGCagggGCCGCGcUCCuGGcUGUCGCGa -3'
miRNA:   3'- -CUUCGa---UGGCGC-AGG-CCaGCGGCGCa -5'
1418 5' -59.9 NC_001335.1 + 34122 0.68 0.353533
Target:  5'- aGGGCUACgGCagcuUCgCGGUCGCcCGCGa -3'
miRNA:   3'- cUUCGAUGgCGc---AG-GCCAGCG-GCGCa -5'
1418 5' -59.9 NC_001335.1 + 41237 0.68 0.337399
Target:  5'- -cAGCUACCGCGUCCucgauGUucUGCuCGCGa -3'
miRNA:   3'- cuUCGAUGGCGCAGGc----CA--GCG-GCGCa -5'
1418 5' -59.9 NC_001335.1 + 2864 0.69 0.29944
Target:  5'- cGAGCUGgUGCGUgCGGcCGUCGUGg -3'
miRNA:   3'- cUUCGAUgGCGCAgGCCaGCGGCGCa -5'
1418 5' -59.9 NC_001335.1 + 48189 0.69 0.297271
Target:  5'- gGGAGCUgACCGCGucuaccucuccgauUCCGG-CGuCCGCGc -3'
miRNA:   3'- -CUUCGA-UGGCGC--------------AGGCCaGC-GGCGCa -5'
1418 5' -59.9 NC_001335.1 + 43350 0.7 0.274212
Target:  5'- cGAGCUGgacggcauCCGCGUCCgaggguucaucgcgcGGUCGUCGUGg -3'
miRNA:   3'- cUUCGAU--------GGCGCAGG---------------CCAGCGGCGCa -5'
1418 5' -59.9 NC_001335.1 + 49231 0.75 0.11425
Target:  5'- cGGGUUGCCGCG-CCaGUCGUCGCGg -3'
miRNA:   3'- cUUCGAUGGCGCaGGcCAGCGGCGCa -5'
1418 5' -59.9 NC_001335.1 + 48888 1.06 0.000558
Target:  5'- aGAAGCUACCGCGUCCGGUCGCCGCGUc -3'
miRNA:   3'- -CUUCGAUGGCGCAGGCCAGCGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.