miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14181 3' -54.9 NC_003521.1 + 28056 0.66 0.98323
Target:  5'- ----cUCUACGGCaucguCACCUUCaUGAGCa -3'
miRNA:   3'- gcuucAGGUGCCG-----GUGGAAGaGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 110594 0.66 0.98323
Target:  5'- aCGAGGUCCuugggcgaggGCGGCUGCa-UCUguaccgCGGGCa -3'
miRNA:   3'- -GCUUCAGG----------UGCCGGUGgaAGA------GCUCG- -5'
14181 3' -54.9 NC_003521.1 + 154649 0.66 0.98323
Target:  5'- cCGcGAGUCgCugGuGCgCACCgUCUuCGAGCa -3'
miRNA:   3'- -GC-UUCAG-GugC-CG-GUGGaAGA-GCUCG- -5'
14181 3' -54.9 NC_003521.1 + 43629 0.66 0.981302
Target:  5'- aGAAGUcCCGCGcugggaccGCCACCgcCUCcAGCc -3'
miRNA:   3'- gCUUCA-GGUGC--------CGGUGGaaGAGcUCG- -5'
14181 3' -54.9 NC_003521.1 + 98246 0.66 0.981302
Target:  5'- gCGggGgcggCCACGGCgggcacggcgaGCCUgg-CGGGCg -3'
miRNA:   3'- -GCuuCa---GGUGCCGg----------UGGAagaGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 83909 0.66 0.981101
Target:  5'- gCGAAGUCCcccgcucCGGCCcgucgccccccguGCCa--UCGGGCa -3'
miRNA:   3'- -GCUUCAGGu------GCCGG-------------UGGaagAGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 78895 0.66 0.980693
Target:  5'- gGggGUCCACgcgGGCCucguagacggggaaGCCgcgCUCcAGCa -3'
miRNA:   3'- gCuuCAGGUG---CCGG--------------UGGaa-GAGcUCG- -5'
14181 3' -54.9 NC_003521.1 + 204611 0.66 0.979214
Target:  5'- uCGggGUCCAugUGGCgACagcgUUUGAGCc -3'
miRNA:   3'- -GCuuCAGGU--GCCGgUGgaa-GAGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 179379 0.66 0.979214
Target:  5'- ---cGUCgCuCGGCuCACC-UCUUGAGCg -3'
miRNA:   3'- gcuuCAG-GuGCCG-GUGGaAGAGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 210006 0.66 0.979214
Target:  5'- uGGAGUUCGCGGguuUCGCCgg--CGGGCc -3'
miRNA:   3'- gCUUCAGGUGCC---GGUGGaagaGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 130447 0.66 0.976957
Target:  5'- aCGAGGU-CACGGCCGagUUUUUCGGucGCg -3'
miRNA:   3'- -GCUUCAgGUGCCGGUg-GAAGAGCU--CG- -5'
14181 3' -54.9 NC_003521.1 + 83721 0.66 0.976957
Target:  5'- aGggGUCCAgGGCCucgugcuCCUcCUCaccgcgggGGGCc -3'
miRNA:   3'- gCuuCAGGUgCCGGu------GGAaGAG--------CUCG- -5'
14181 3' -54.9 NC_003521.1 + 205722 0.66 0.976957
Target:  5'- aCGggGcUCG-GGCCGCCUcgaauccggcaUgUCGAGCg -3'
miRNA:   3'- -GCuuCaGGUgCCGGUGGA-----------AgAGCUCG- -5'
14181 3' -54.9 NC_003521.1 + 16872 0.66 0.976722
Target:  5'- aCGAcGUgcguuccCCGCGGCCGCCUcgaccccCUCGGccGCg -3'
miRNA:   3'- -GCUuCA-------GGUGCCGGUGGAa------GAGCU--CG- -5'
14181 3' -54.9 NC_003521.1 + 31731 0.66 0.976485
Target:  5'- gGAcG-CCGCGGCCACCgccuccgccgcCUCGAccgGCa -3'
miRNA:   3'- gCUuCaGGUGCCGGUGGaa---------GAGCU---CG- -5'
14181 3' -54.9 NC_003521.1 + 194859 0.66 0.97552
Target:  5'- uGGAGcucuucugccucuucUCCACGGCCcUCUUCgaccgCGAGa -3'
miRNA:   3'- gCUUC---------------AGGUGCCGGuGGAAGa----GCUCg -5'
14181 3' -54.9 NC_003521.1 + 75983 0.66 0.974525
Target:  5'- aGAAGUCUggcgcCGGCCGCCgguUCcuccucccccgCGGGCg -3'
miRNA:   3'- gCUUCAGGu----GCCGGUGGa--AGa----------GCUCG- -5'
14181 3' -54.9 NC_003521.1 + 225837 0.66 0.974525
Target:  5'- uGuGGUCCACGGCgCGCUcgUgguggugCGGGCa -3'
miRNA:   3'- gCuUCAGGUGCCG-GUGGaaGa------GCUCG- -5'
14181 3' -54.9 NC_003521.1 + 71179 0.66 0.974525
Target:  5'- uCGgcGUCCuccaGGuCCACCUcCUCGAauucGCa -3'
miRNA:   3'- -GCuuCAGGug--CC-GGUGGAaGAGCU----CG- -5'
14181 3' -54.9 NC_003521.1 + 53223 0.66 0.974525
Target:  5'- gGGAGUCCGCGGgcgaagcgaCCGCCgg--CGaAGCc -3'
miRNA:   3'- gCUUCAGGUGCC---------GGUGGaagaGC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.