miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14181 5' -57.1 NC_003521.1 + 155059 0.66 0.925404
Target:  5'- cGGCUgCgaGGCGcUGGccaccucgcUCAUGGCCa- -3'
miRNA:   3'- aCCGA-GaaCCGCuACC---------AGUACCGGca -5'
14181 5' -57.1 NC_003521.1 + 78052 0.66 0.925404
Target:  5'- uUGaGCUUguaguugGGCGAguUGGUCuUGGCCa- -3'
miRNA:   3'- -AC-CGAGaa-----CCGCU--ACCAGuACCGGca -5'
14181 5' -57.1 NC_003521.1 + 237988 0.66 0.925404
Target:  5'- aGGCgUCgucGGCGAUcGGUCGgcugGGUCGc -3'
miRNA:   3'- aCCG-AGaa-CCGCUA-CCAGUa---CCGGCa -5'
14181 5' -57.1 NC_003521.1 + 93053 0.66 0.920051
Target:  5'- gGGCUUcaacaccgUGGUGGUGGcCAUgGGCCuGUg -3'
miRNA:   3'- aCCGAGa-------ACCGCUACCaGUA-CCGG-CA- -5'
14181 5' -57.1 NC_003521.1 + 139386 0.66 0.920051
Target:  5'- cGuGCUCUUGGCcccgcGGUGGUCGauGCUGa -3'
miRNA:   3'- aC-CGAGAACCG-----CUACCAGUacCGGCa -5'
14181 5' -57.1 NC_003521.1 + 127398 0.66 0.914471
Target:  5'- cGGCcacaGGCGGUGGUCGUGcaGCgCGUu -3'
miRNA:   3'- aCCGagaaCCGCUACCAGUAC--CG-GCA- -5'
14181 5' -57.1 NC_003521.1 + 160292 0.66 0.908667
Target:  5'- gGGCUCcgccggcaaGGCGGUGGgCAcGGCCa- -3'
miRNA:   3'- aCCGAGaa-------CCGCUACCaGUaCCGGca -5'
14181 5' -57.1 NC_003521.1 + 25812 0.67 0.90264
Target:  5'- cGGCUC-UGGCGGUGcGUUAcgagacgccgcUGGCuCGc -3'
miRNA:   3'- aCCGAGaACCGCUAC-CAGU-----------ACCG-GCa -5'
14181 5' -57.1 NC_003521.1 + 167603 0.67 0.90264
Target:  5'- -cGCUCguggUGGCGuUGGUCGUcGUCGUc -3'
miRNA:   3'- acCGAGa---ACCGCuACCAGUAcCGGCA- -5'
14181 5' -57.1 NC_003521.1 + 125153 0.67 0.896392
Target:  5'- aGGUc---GGCGAUGGUCAgcuugUGGUCGa -3'
miRNA:   3'- aCCGagaaCCGCUACCAGU-----ACCGGCa -5'
14181 5' -57.1 NC_003521.1 + 121381 0.67 0.896392
Target:  5'- aGGCUCUUGGgggccaUGAUGGUgAa-GCCGUu -3'
miRNA:   3'- aCCGAGAACC------GCUACCAgUacCGGCA- -5'
14181 5' -57.1 NC_003521.1 + 150719 0.67 0.883245
Target:  5'- cUGGCUCUcGGCcGUGGgccaCGUccugGGCCGg -3'
miRNA:   3'- -ACCGAGAaCCGcUACCa---GUA----CCGGCa -5'
14181 5' -57.1 NC_003521.1 + 235225 0.67 0.869255
Target:  5'- gUGGCUCUgggUGGUGAaGGaauaCAcGGCCGg -3'
miRNA:   3'- -ACCGAGA---ACCGCUaCCa---GUaCCGGCa -5'
14181 5' -57.1 NC_003521.1 + 32372 0.67 0.869255
Target:  5'- gGGCUUUUGGUGGcg--CGUGGCCa- -3'
miRNA:   3'- aCCGAGAACCGCUaccaGUACCGGca -5'
14181 5' -57.1 NC_003521.1 + 93882 0.68 0.8537
Target:  5'- cGGCUCUUgaucuuuuucgagGGC-AUGGgCGUGGCUGg -3'
miRNA:   3'- aCCGAGAA-------------CCGcUACCaGUACCGGCa -5'
14181 5' -57.1 NC_003521.1 + 100195 0.68 0.830855
Target:  5'- aGGCUCUcGGCcGUguaccgcugcaGGUCGUaGGCCGg -3'
miRNA:   3'- aCCGAGAaCCGcUA-----------CCAGUA-CCGGCa -5'
14181 5' -57.1 NC_003521.1 + 237394 0.69 0.814252
Target:  5'- cGGCgUCggcaUGGCGggGGUCugaGUGGCCc- -3'
miRNA:   3'- aCCG-AGa---ACCGCuaCCAG---UACCGGca -5'
14181 5' -57.1 NC_003521.1 + 207801 0.69 0.814252
Target:  5'- aUGGCac--GGCGcUGGUCAagcUGGCCGa -3'
miRNA:   3'- -ACCGagaaCCGCuACCAGU---ACCGGCa -5'
14181 5' -57.1 NC_003521.1 + 127157 0.69 0.805712
Target:  5'- aGGCgc--GGUuguUGGUCAUGGCCGg -3'
miRNA:   3'- aCCGagaaCCGcu-ACCAGUACCGGCa -5'
14181 5' -57.1 NC_003521.1 + 38471 0.69 0.805712
Target:  5'- gGGCUC-UGGCGGUGGgc---GCCGg -3'
miRNA:   3'- aCCGAGaACCGCUACCaguacCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.