miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14182 3' -56.8 NC_003521.1 + 110663 0.66 0.965154
Target:  5'- gUCACGGcCCGGUCgGccagcgcgucggUGGCcucGAGCUUGa -3'
miRNA:   3'- gAGUGCC-GGCCAGgC------------ACUG---CUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 56068 0.66 0.965154
Target:  5'- aUCACGGCC--UCCGUcACcAGCUCGc -3'
miRNA:   3'- gAGUGCCGGccAGGCAcUGcUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 217275 0.66 0.962293
Target:  5'- aUCACGGCCucgcugaagcugcauGUcaCCGUGAUGAggcuGCUCGu -3'
miRNA:   3'- gAGUGCCGGc--------------CA--GGCACUGCU----UGAGC- -5'
14182 3' -56.8 NC_003521.1 + 167038 0.66 0.961966
Target:  5'- aUgACGGCCaGUCCGUGGuCacACUUGg -3'
miRNA:   3'- gAgUGCCGGcCAGGCACU-GcuUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 127374 0.66 0.961966
Target:  5'- -gCGCGGCaGGUgCGUGAUGAAgggCGg -3'
miRNA:   3'- gaGUGCCGgCCAgGCACUGCUUga-GC- -5'
14182 3' -56.8 NC_003521.1 + 29375 0.66 0.961966
Target:  5'- -cCGCGGCCgcGGUacccugguugcCCcUGugGAGCUCGu -3'
miRNA:   3'- gaGUGCCGG--CCA-----------GGcACugCUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 88545 0.66 0.958581
Target:  5'- -cCGCGGCgugcuggaGGUCCGU-ACGGACUUc -3'
miRNA:   3'- gaGUGCCGg-------CCAGGCAcUGCUUGAGc -5'
14182 3' -56.8 NC_003521.1 + 7970 0.66 0.958581
Target:  5'- gUCGCGGCCGGgagggUCCGcGGCGGc---- -3'
miRNA:   3'- gAGUGCCGGCC-----AGGCaCUGCUugagc -5'
14182 3' -56.8 NC_003521.1 + 148627 0.66 0.954994
Target:  5'- -gCGCGGCCGGgCgGcGAaaaacggcccCGAGCUCGg -3'
miRNA:   3'- gaGUGCCGGCCaGgCaCU----------GCUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 55768 0.66 0.954994
Target:  5'- -gCGCGGCCGG-CgGUacagcucgaaGAUGAACUUGc -3'
miRNA:   3'- gaGUGCCGGCCaGgCA----------CUGCUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 78758 0.66 0.954994
Target:  5'- -gCACGGCCacgaGGUCCGaGACGucgcAgUCGa -3'
miRNA:   3'- gaGUGCCGG----CCAGGCaCUGCu---UgAGC- -5'
14182 3' -56.8 NC_003521.1 + 187613 0.66 0.951203
Target:  5'- -gCACGGCCuG-CCG-GGCGAGC-CGg -3'
miRNA:   3'- gaGUGCCGGcCaGGCaCUGCUUGaGC- -5'
14182 3' -56.8 NC_003521.1 + 165042 0.66 0.951203
Target:  5'- aUCGCGGCCuucUuuGaUGACuGAACUCGg -3'
miRNA:   3'- gAGUGCCGGcc-AggC-ACUG-CUUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 54349 0.66 0.951203
Target:  5'- -cCugGGCCacucGGggCGUGGCGAGCUUu -3'
miRNA:   3'- gaGugCCGG----CCagGCACUGCUUGAGc -5'
14182 3' -56.8 NC_003521.1 + 215618 0.66 0.947204
Target:  5'- -aCACGGCCGucuuGUCgGUGAgGAcgggGCUCc -3'
miRNA:   3'- gaGUGCCGGC----CAGgCACUgCU----UGAGc -5'
14182 3' -56.8 NC_003521.1 + 92258 0.66 0.947204
Target:  5'- uCUUuuGGCCGGUCgCGUcGACGcgUUCa -3'
miRNA:   3'- -GAGugCCGGCCAG-GCA-CUGCuuGAGc -5'
14182 3' -56.8 NC_003521.1 + 167681 0.67 0.938572
Target:  5'- gCUCGCGGuuG--CgGUGACGAcGCUCGu -3'
miRNA:   3'- -GAGUGCCggCcaGgCACUGCU-UGAGC- -5'
14182 3' -56.8 NC_003521.1 + 142257 0.67 0.933936
Target:  5'- -cCACGacaGCUGGUCCGccggaGACGAcgaugGCUCGg -3'
miRNA:   3'- gaGUGC---CGGCCAGGCa----CUGCU-----UGAGC- -5'
14182 3' -56.8 NC_003521.1 + 32813 0.67 0.929084
Target:  5'- -aUACGG-CGGUCCGaaaaGACGuACUCGc -3'
miRNA:   3'- gaGUGCCgGCCAGGCa---CUGCuUGAGC- -5'
14182 3' -56.8 NC_003521.1 + 212884 0.67 0.929084
Target:  5'- -cCGCGGUU--UCCuUGACGAACUCGa -3'
miRNA:   3'- gaGUGCCGGccAGGcACUGCUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.