miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14185 3' -43.6 NC_003521.1 + 178848 0.68 1
Target:  5'- ---cGCGggGGCGACGGGAaagucagcgggcAGUAGAg -3'
miRNA:   3'- guuuCGUuaUUGCUGCUCU------------UCAUCUg -5'
14185 3' -43.6 NC_003521.1 + 207517 0.67 1
Target:  5'- --cAGCAGUGACGugGGuGAGaccaAGGCa -3'
miRNA:   3'- guuUCGUUAUUGCugCUcUUCa---UCUG- -5'
14185 3' -43.6 NC_003521.1 + 34925 0.68 1
Target:  5'- --cAGCAGUAGCGGCGcAGAcccucGUAGuCg -3'
miRNA:   3'- guuUCGUUAUUGCUGC-UCUu----CAUCuG- -5'
14185 3' -43.6 NC_003521.1 + 133231 0.68 1
Target:  5'- aGGGGCGAUGGCGGuCGAGGAc--GACc -3'
miRNA:   3'- gUUUCGUUAUUGCU-GCUCUUcauCUG- -5'
14185 3' -43.6 NC_003521.1 + 91192 0.67 1
Target:  5'- gGAAGCGGUAccGCgGGCGcGucGUGGGCa -3'
miRNA:   3'- gUUUCGUUAU--UG-CUGCuCuuCAUCUG- -5'
14185 3' -43.6 NC_003521.1 + 55547 0.68 1
Target:  5'- ---cGCGccGACGAgGGGAAGUAGcACu -3'
miRNA:   3'- guuuCGUuaUUGCUgCUCUUCAUC-UG- -5'
14185 3' -43.6 NC_003521.1 + 118705 0.68 1
Target:  5'- gAGGGCAGgcucAugGGCGAGggGcgcGGCa -3'
miRNA:   3'- gUUUCGUUa---UugCUGCUCuuCau-CUG- -5'
14185 3' -43.6 NC_003521.1 + 7143 0.68 1
Target:  5'- aCAAAcGCGGagGACGACGAcgagGAAGaGGACa -3'
miRNA:   3'- -GUUU-CGUUa-UUGCUGCU----CUUCaUCUG- -5'
14185 3' -43.6 NC_003521.1 + 204749 0.68 1
Target:  5'- cCAGGGCGGUGACGcucaauGCGuAGAAcaGGACg -3'
miRNA:   3'- -GUUUCGUUAUUGC------UGC-UCUUcaUCUG- -5'
14185 3' -43.6 NC_003521.1 + 87580 0.66 1
Target:  5'- ---cGCGGUAGCGACGccaAGAAGUc--- -3'
miRNA:   3'- guuuCGUUAUUGCUGC---UCUUCAucug -5'
14185 3' -43.6 NC_003521.1 + 14359 0.67 1
Target:  5'- aCGAAGU----ACcACGAGAGGUAGAa -3'
miRNA:   3'- -GUUUCGuuauUGcUGCUCUUCAUCUg -5'
14185 3' -43.6 NC_003521.1 + 157281 0.67 1
Target:  5'- cCGGGGCAAcGGCGgccgcguACGGGggG-AGGCg -3'
miRNA:   3'- -GUUUCGUUaUUGC-------UGCUCuuCaUCUG- -5'
14185 3' -43.6 NC_003521.1 + 103745 0.68 1
Target:  5'- --cAGCAccgccGCGugGuGGAAGUAGACc -3'
miRNA:   3'- guuUCGUuau--UGCugC-UCUUCAUCUG- -5'
14185 3' -43.6 NC_003521.1 + 43427 0.68 1
Target:  5'- ---uGCGugccCGACGAGGAGgcGGCg -3'
miRNA:   3'- guuuCGUuauuGCUGCUCUUCauCUG- -5'
14185 3' -43.6 NC_003521.1 + 218544 0.68 1
Target:  5'- gAGAGCugcca-GGCGAGGcguGGUAGACc -3'
miRNA:   3'- gUUUCGuuauugCUGCUCU---UCAUCUG- -5'
14185 3' -43.6 NC_003521.1 + 80960 0.67 1
Target:  5'- gAAGGUGAacaUGACGACGGGGcgcgAGUAGcaGCg -3'
miRNA:   3'- gUUUCGUU---AUUGCUGCUCU----UCAUC--UG- -5'
14185 3' -43.6 NC_003521.1 + 154311 0.68 1
Target:  5'- cCGGGGCc--GACG-CGGGAagAGUAGGCa -3'
miRNA:   3'- -GUUUCGuuaUUGCuGCUCU--UCAUCUG- -5'
14185 3' -43.6 NC_003521.1 + 105715 0.67 1
Target:  5'- -uAGGCGA-AGCGGCGGGuGGUgaAGACc -3'
miRNA:   3'- guUUCGUUaUUGCUGCUCuUCA--UCUG- -5'
14185 3' -43.6 NC_003521.1 + 23003 0.67 1
Target:  5'- --cGGUGAUAGCGGCauccGAGGAGgccaaugGGACg -3'
miRNA:   3'- guuUCGUUAUUGCUG----CUCUUCa------UCUG- -5'
14185 3' -43.6 NC_003521.1 + 178226 0.67 1
Target:  5'- --uAGCAGUuccCGG-GGGggGUAGGCg -3'
miRNA:   3'- guuUCGUUAuu-GCUgCUCuuCAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.