miRNA display CGI


Results 1 - 20 of 593 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14185 5' -66 NC_003521.1 + 221765 0.66 0.630555
Target:  5'- aGCGUCUGCGccgcGCCGCCGuccucgaagcuccaGCguccgcucgauaucuGGCACGUc -3'
miRNA:   3'- -CGCGGGCGCa---CGGCGGC--------------CG---------------CCGUGCG- -5'
14185 5' -66 NC_003521.1 + 187634 0.66 0.629632
Target:  5'- -gGgCCGCGcGCCGCUGGCcaucuucaucGGCGaggGCg -3'
miRNA:   3'- cgCgGGCGCaCGGCGGCCG----------CCGUg--CG- -5'
14185 5' -66 NC_003521.1 + 196384 0.66 0.629632
Target:  5'- cCGCCUccuGCGUGgUGaagggCGGCGGCAgGUa -3'
miRNA:   3'- cGCGGG---CGCACgGCg----GCCGCCGUgCG- -5'
14185 5' -66 NC_003521.1 + 77597 0.66 0.629632
Target:  5'- uCGUCCGCGagucccagGCCGCCGGagcuacuGC-CGCu -3'
miRNA:   3'- cGCGGGCGCa-------CGGCGGCCgc-----CGuGCG- -5'
14185 5' -66 NC_003521.1 + 228971 0.66 0.629632
Target:  5'- uCGUCCGaggagGUG-CGCgGGCGGCGCa- -3'
miRNA:   3'- cGCGGGCg----CACgGCGgCCGCCGUGcg -5'
14185 5' -66 NC_003521.1 + 77510 0.66 0.629632
Target:  5'- cCGCUCGC--GCCGCUGaccGUGGaCACGCc -3'
miRNA:   3'- cGCGGGCGcaCGGCGGC---CGCC-GUGCG- -5'
14185 5' -66 NC_003521.1 + 158057 0.66 0.629632
Target:  5'- uGUGCuCCaCG-GcCCGCCGGUcGCGCGUg -3'
miRNA:   3'- -CGCG-GGcGCaC-GGCGGCCGcCGUGCG- -5'
14185 5' -66 NC_003521.1 + 217395 0.66 0.629632
Target:  5'- uGgGCaCCGCcagGCUGagCGGCGGCAUGa -3'
miRNA:   3'- -CgCG-GGCGca-CGGCg-GCCGCCGUGCg -5'
14185 5' -66 NC_003521.1 + 87226 0.66 0.629632
Target:  5'- aGCGCCaaccugGCGcUGCUGCUGcaggugguggaGCGGCuguGCGCc -3'
miRNA:   3'- -CGCGGg-----CGC-ACGGCGGC-----------CGCCG---UGCG- -5'
14185 5' -66 NC_003521.1 + 187132 0.66 0.629632
Target:  5'- cGCGUaCCGUGUauaacuaacauGcCCGgCGGCGGCAggaGCg -3'
miRNA:   3'- -CGCG-GGCGCA-----------C-GGCgGCCGCCGUg--CG- -5'
14185 5' -66 NC_003521.1 + 213118 0.66 0.629632
Target:  5'- cGCGCUgGgUGUGgCGUgGuGCGGC-CGCa -3'
miRNA:   3'- -CGCGGgC-GCACgGCGgC-CGCCGuGCG- -5'
14185 5' -66 NC_003521.1 + 39590 0.66 0.629632
Target:  5'- gGCGUCgGCGgucCUGCCcuggguGGCGGCGucuCGCa -3'
miRNA:   3'- -CGCGGgCGCac-GGCGG------CCGCCGU---GCG- -5'
14185 5' -66 NC_003521.1 + 30944 0.66 0.629632
Target:  5'- cGUGCCguaGguaGUGCCaaGCCaGGCgcucGGCACGCa -3'
miRNA:   3'- -CGCGGg--Cg--CACGG--CGG-CCG----CCGUGCG- -5'
14185 5' -66 NC_003521.1 + 91964 0.66 0.629632
Target:  5'- -gGCUgGCGUaGCUgGCgCGGUgcacGGCACGCa -3'
miRNA:   3'- cgCGGgCGCA-CGG-CG-GCCG----CCGUGCG- -5'
14185 5' -66 NC_003521.1 + 64745 0.66 0.629632
Target:  5'- aCG-CCGUG-GCCaagacGCCGGcCGGCGCGg -3'
miRNA:   3'- cGCgGGCGCaCGG-----CGGCC-GCCGUGCg -5'
14185 5' -66 NC_003521.1 + 169028 0.66 0.629632
Target:  5'- uGUGCgCGCGccgGUCaaGCUGGUcucGGCGCGCc -3'
miRNA:   3'- -CGCGgGCGCa--CGG--CGGCCG---CCGUGCG- -5'
14185 5' -66 NC_003521.1 + 169451 0.66 0.629632
Target:  5'- gGCGUCgGCG-GCgGCgGGUucgucgccaGGCGCGUc -3'
miRNA:   3'- -CGCGGgCGCaCGgCGgCCG---------CCGUGCG- -5'
14185 5' -66 NC_003521.1 + 111201 0.66 0.626864
Target:  5'- aGCaCCCGCcggGCgGCCGGCGacucgacuauuagaGCGuCGCg -3'
miRNA:   3'- -CGcGGGCGca-CGgCGGCCGC--------------CGU-GCG- -5'
14185 5' -66 NC_003521.1 + 239526 0.66 0.625018
Target:  5'- gGCGCCguaGCGgaaccauucgucggcGUCGCgGGCGGCuagggucagcguguuGCGCu -3'
miRNA:   3'- -CGCGGg--CGCa--------------CGGCGgCCGCCG---------------UGCG- -5'
14185 5' -66 NC_003521.1 + 39299 0.66 0.625018
Target:  5'- gGCGCCguaGCGgaaccauucgucggcGUCGCgGGCGGCuagggucagcguguuGCGCu -3'
miRNA:   3'- -CGCGGg--CGCa--------------CGGCGgCCGCCG---------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.