miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14187 3' -53.9 NC_003521.1 + 67679 0.66 0.990161
Target:  5'- uGUAUCGuGAUcuccgauaGcGAGGaGGAAGAGGGUGa -3'
miRNA:   3'- -CGUAGU-CUG--------C-CUCCaUCUUCUCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 103074 0.66 0.990161
Target:  5'- uGCG-CGGGCGagggcugcugcuGGGGaUGcGAAGGGGGCGg -3'
miRNA:   3'- -CGUaGUCUGC------------CUCC-AU-CUUCUCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 87128 0.66 0.990161
Target:  5'- cGCGUCccaaGGAgCGcGAGGUGuuGGAGcGGGCGc -3'
miRNA:   3'- -CGUAG----UCU-GC-CUCCAU--CUUCuCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 123689 0.66 0.990161
Target:  5'- uGCggCGuGGCGGuGGaAGAGGAGGcgGCGg -3'
miRNA:   3'- -CGuaGU-CUGCCuCCaUCUUCUCC--CGC- -5'
14187 3' -53.9 NC_003521.1 + 166912 0.66 0.990161
Target:  5'- gGCAcgGGGCaGAGGUAGAc-GGGGCc -3'
miRNA:   3'- -CGUagUCUGcCUCCAUCUucUCCCGc -5'
14187 3' -53.9 NC_003521.1 + 187048 0.66 0.990161
Target:  5'- uGCGgcuaaCGGGCGGgaaGGGUGccagcGAgcGGAGGGCGc -3'
miRNA:   3'- -CGUa----GUCUGCC---UCCAU-----CU--UCUCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 79018 0.66 0.988858
Target:  5'- aGCcgUAGAUGGAGGUcuuGGuGGccGGCGu -3'
miRNA:   3'- -CGuaGUCUGCCUCCA---UCuUCucCCGC- -5'
14187 3' -53.9 NC_003521.1 + 172952 0.66 0.988858
Target:  5'- uGCAccugCuGACGGu-GUAGGAGGGGGUu -3'
miRNA:   3'- -CGUa---GuCUGCCucCAUCUUCUCCCGc -5'
14187 3' -53.9 NC_003521.1 + 102651 0.66 0.988858
Target:  5'- cCAUCgAGACaGAGGcgcgAGGAGAcGGCGa -3'
miRNA:   3'- cGUAG-UCUGcCUCCa---UCUUCUcCCGC- -5'
14187 3' -53.9 NC_003521.1 + 120880 0.66 0.987424
Target:  5'- cGCGUCAucACGcccgugcAGGUGGucGGGGGCGg -3'
miRNA:   3'- -CGUAGUc-UGCc------UCCAUCuuCUCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 156966 0.66 0.987424
Target:  5'- -gGUCgaGGACGGAGGaGGAGGAgucgauggagGGGaCGg -3'
miRNA:   3'- cgUAG--UCUGCCUCCaUCUUCU----------CCC-GC- -5'
14187 3' -53.9 NC_003521.1 + 5652 0.66 0.987424
Target:  5'- aCAUgGcGGCGGAgGGUGGggGGucgagacacGGGCGc -3'
miRNA:   3'- cGUAgU-CUGCCU-CCAUCuuCU---------CCCGC- -5'
14187 3' -53.9 NC_003521.1 + 198285 0.66 0.985853
Target:  5'- gGCGUC--GCGGAGGaccgcuGGGGGGCu -3'
miRNA:   3'- -CGUAGucUGCCUCCaucu--UCUCCCGc -5'
14187 3' -53.9 NC_003521.1 + 85874 0.66 0.985853
Target:  5'- gGCAcCAGGCGcucgcGGUAGAGGcgcgugucgcacAGGGCGu -3'
miRNA:   3'- -CGUaGUCUGCcu---CCAUCUUC------------UCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 43663 0.66 0.985853
Target:  5'- ---gCAGAgaGGAGG-AGAGGAGGaGCa -3'
miRNA:   3'- cguaGUCUg-CCUCCaUCUUCUCC-CGc -5'
14187 3' -53.9 NC_003521.1 + 44947 0.66 0.985853
Target:  5'- ----aGGACGG-GGaGGAAGGGcGGCGa -3'
miRNA:   3'- cguagUCUGCCuCCaUCUUCUC-CCGC- -5'
14187 3' -53.9 NC_003521.1 + 211861 0.66 0.984135
Target:  5'- aGguUCuGACGGuagAGGU---AGAGGGCGc -3'
miRNA:   3'- -CguAGuCUGCC---UCCAucuUCUCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 128910 0.66 0.984135
Target:  5'- gGCGUCGGuACacAGGUcGAAGcGGGCGg -3'
miRNA:   3'- -CGUAGUC-UGccUCCAuCUUCuCCCGC- -5'
14187 3' -53.9 NC_003521.1 + 91469 0.66 0.984135
Target:  5'- cGCG-CAGcucGCGGguguaugcguGGGUGGggGAuGGGCa -3'
miRNA:   3'- -CGUaGUC---UGCC----------UCCAUCuuCU-CCCGc -5'
14187 3' -53.9 NC_003521.1 + 187888 0.66 0.984135
Target:  5'- --cUCGGGCGGcacGGgcGgcGGGGGCa -3'
miRNA:   3'- cguAGUCUGCCu--CCauCuuCUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.