miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14187 5' -50.8 NC_003521.1 + 140041 0.66 0.998455
Target:  5'- -cCUCUUcuugUUCgUCCUCCUcgCGCUACGa -3'
miRNA:   3'- caGAGAG----AAG-AGGAGGAaaGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 22110 0.66 0.998278
Target:  5'- uUCUCgcccgccgccgccgCcgUCUCCUCCgccUUCGCCGCc -3'
miRNA:   3'- cAGAGa-------------Ga-AGAGGAGGa--AAGUGGUGu -5'
14187 5' -50.8 NC_003521.1 + 174603 0.66 0.99815
Target:  5'- aUCUUUCUauucagCUCCUCCUUcuuaGCCugGg -3'
miRNA:   3'- cAGAGAGAa-----GAGGAGGAAag--UGGugU- -5'
14187 5' -50.8 NC_003521.1 + 165291 0.66 0.997797
Target:  5'- cGUCUCUCUggcuguucuuccUCUUCUCCUgUCuCCGu- -3'
miRNA:   3'- -CAGAGAGA------------AGAGGAGGAaAGuGGUgu -5'
14187 5' -50.8 NC_003521.1 + 98639 0.66 0.997758
Target:  5'- cUC-CUCUUCuUCCUCCUcguccucUUCuuCCGCAg -3'
miRNA:   3'- cAGaGAGAAG-AGGAGGA-------AAGu-GGUGU- -5'
14187 5' -50.8 NC_003521.1 + 118380 0.66 0.997388
Target:  5'- gGUCUCUCUUCUUUUUCc--CACCGg- -3'
miRNA:   3'- -CAGAGAGAAGAGGAGGaaaGUGGUgu -5'
14187 5' -50.8 NC_003521.1 + 123857 0.67 0.996918
Target:  5'- -cCUUcCUUCUCCUCgUUUC-CCGCc -3'
miRNA:   3'- caGAGaGAAGAGGAGgAAAGuGGUGu -5'
14187 5' -50.8 NC_003521.1 + 95551 0.67 0.995768
Target:  5'- aUgUC-CUUCUCCUCCUgugaCAgCACAa -3'
miRNA:   3'- cAgAGaGAAGAGGAGGAaa--GUgGUGU- -5'
14187 5' -50.8 NC_003521.1 + 98539 0.68 0.993406
Target:  5'- cGUC-CUCUUCuUCCUCCga--GCCAUc -3'
miRNA:   3'- -CAGaGAGAAG-AGGAGGaaagUGGUGu -5'
14187 5' -50.8 NC_003521.1 + 84653 0.68 0.993406
Target:  5'- uGUCgugggUCUCCUCCgccUCGCCACc -3'
miRNA:   3'- -CAGagagaAGAGGAGGaa-AGUGGUGu -5'
14187 5' -50.8 NC_003521.1 + 191436 0.68 0.992417
Target:  5'- uGUCUCUCUcccUCUCCUUUgcgUUUCucguCCGCu -3'
miRNA:   3'- -CAGAGAGA---AGAGGAGG---AAAGu---GGUGu -5'
14187 5' -50.8 NC_003521.1 + 146328 0.68 0.991314
Target:  5'- cGUgUCUUUUCUCCccgaUCCggaggcaUCACCGCGc -3'
miRNA:   3'- -CAgAGAGAAGAGG----AGGaa-----AGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 83733 0.68 0.990088
Target:  5'- ---cCUCgugCUCCUCC--UCACCGCGg -3'
miRNA:   3'- cagaGAGaa-GAGGAGGaaAGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 67797 0.69 0.987234
Target:  5'- -gCUCUuCUUcCUCCUCCUcUCGCgGCu -3'
miRNA:   3'- caGAGA-GAA-GAGGAGGAaAGUGgUGu -5'
14187 5' -50.8 NC_003521.1 + 73624 0.69 0.981814
Target:  5'- aGUCUCUCUUgUUC-CCUUUCuauCUGCAg -3'
miRNA:   3'- -CAGAGAGAAgAGGaGGAAAGu--GGUGU- -5'
14187 5' -50.8 NC_003521.1 + 59941 0.7 0.974826
Target:  5'- cUCUCgcuggaCUUCUCCgUCUaUCGCCACAa -3'
miRNA:   3'- cAGAGa-----GAAGAGGaGGAaAGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 129511 0.7 0.974826
Target:  5'- cGUCUCUCcUCUCUuacagUCCgg-CGCUACAg -3'
miRNA:   3'- -CAGAGAGaAGAGG-----AGGaaaGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 42585 0.71 0.962711
Target:  5'- aGUCUcCUUUUCUCCUagUCUaUUACCACGg -3'
miRNA:   3'- -CAGA-GAGAAGAGGA--GGAaAGUGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 85359 0.71 0.947035
Target:  5'- cGUCUCUCUcacccccuccuUCUCCUCCg--CcUCACAa -3'
miRNA:   3'- -CAGAGAGA-----------AGAGGAGGaaaGuGGUGU- -5'
14187 5' -50.8 NC_003521.1 + 101587 0.72 0.937772
Target:  5'- cGUCUguccgaccCUCUUCUCCUCCUacucagugCACCAg- -3'
miRNA:   3'- -CAGA--------GAGAAGAGGAGGAaa------GUGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.