miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 59595 0.66 0.914683
Target:  5'- cGCCaaGAaGGAcgguaguggcggcGGCCccgGCGGCGAcCGCg -3'
miRNA:   3'- -CGGcgCUaCCU-------------UCGG---CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 184922 0.66 0.915234
Target:  5'- cGCCGCcGUcGGAGGgU-CGGCGAcCGCg -3'
miRNA:   3'- -CGGCGcUA-CCUUCgGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 168553 0.66 0.909631
Target:  5'- gGCgGCGcUGGcGGGCUGCGGguaaGGUgGCg -3'
miRNA:   3'- -CGgCGCuACC-UUCGGCGCCg---CUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 43480 0.66 0.915234
Target:  5'- cGCgGCGGccgUGcuGGCCGCGGCGGccaacauccgUCaGCg -3'
miRNA:   3'- -CGgCGCU---ACcuUCGGCGCCGCU----------AG-CG- -5'
14189 3' -58.5 NC_003521.1 + 214161 0.66 0.920626
Target:  5'- aGCCGCgGAUGGcuuGGUCGaCGGgcaguuCGGUgGCa -3'
miRNA:   3'- -CGGCG-CUACCu--UCGGC-GCC------GCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 48543 0.66 0.897794
Target:  5'- uGCCGaCGAacggcgUGGAGacGCCGCuGGUGAagGUg -3'
miRNA:   3'- -CGGC-GCU------ACCUU--CGGCG-CCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 53182 0.66 0.920626
Target:  5'- cGCCGaugaaGAUGGccAGCgGCGcGCGGcccggcUCGCc -3'
miRNA:   3'- -CGGCg----CUACCu-UCGgCGC-CGCU------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 27459 0.66 0.909631
Target:  5'- gGCCGUGAgcgccaGGcuGGCCagguccgucauGUGGCGGUCGg -3'
miRNA:   3'- -CGGCGCUa-----CCu-UCGG-----------CGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 224198 0.66 0.920626
Target:  5'- cGCCGCGAca-GAGCCaGCGGUacuGAcgcccguagUCGCg -3'
miRNA:   3'- -CGGCGCUaccUUCGG-CGCCG---CU---------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 131125 0.66 0.920626
Target:  5'- uGCCGgGAagGGAcAGCgCGaccccuCGGCcGAUCGCa -3'
miRNA:   3'- -CGGCgCUa-CCU-UCG-GC------GCCG-CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 145579 0.66 0.915234
Target:  5'- uGCUGCGgcGGcAcgacgcggcGGCCGUGGCc-UCGCu -3'
miRNA:   3'- -CGGCGCuaCC-U---------UCGGCGCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 89842 0.66 0.903817
Target:  5'- cGCCGUagccGAUGucGGCCGCcaGCGccgcGUCGCg -3'
miRNA:   3'- -CGGCG----CUACcuUCGGCGc-CGC----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 12337 0.66 0.915234
Target:  5'- uGCUGCGAggcuauggugcUGGgcGUgGUGGgCGAgUCGCu -3'
miRNA:   3'- -CGGCGCU-----------ACCuuCGgCGCC-GCU-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 129348 0.66 0.915234
Target:  5'- cGCCGCGAaGGAgggaaaGGCCcguaGCaGGCGA-CGg -3'
miRNA:   3'- -CGGCGCUaCCU------UCGG----CG-CCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 221926 0.66 0.903817
Target:  5'- gGCgUGCGAggGGAAGauGCacgacacguccaGGCGGUCGCc -3'
miRNA:   3'- -CG-GCGCUa-CCUUCggCG------------CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 165012 0.66 0.895947
Target:  5'- gGCCGCaagGAcagguuccucagcaUGGugcuGCCGCGGCG-UCuGCa -3'
miRNA:   3'- -CGGCG---CU--------------ACCuu--CGGCGCCGCuAG-CG- -5'
14189 3' -58.5 NC_003521.1 + 127295 0.66 0.903817
Target:  5'- cGgCGCGAgGGAucccAGCCGCuGCGcaCGCu -3'
miRNA:   3'- -CgGCGCUaCCU----UCGGCGcCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 39886 0.66 0.920626
Target:  5'- cGuuGgGGUGGGcgugcGGUCGUcccGGCGggCGCg -3'
miRNA:   3'- -CggCgCUACCU-----UCGGCG---CCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 129647 0.66 0.897794
Target:  5'- uCCGCGGcgccGucGCCGgGGCGGcCGCg -3'
miRNA:   3'- cGGCGCUac--CuuCGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 166209 0.67 0.864653
Target:  5'- cCCGCuguUGGc-GCgGCGGCGAggCGCg -3'
miRNA:   3'- cGGCGcu-ACCuuCGgCGCCGCUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.