miRNA display CGI


Results 121 - 140 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 153178 0.67 0.871673
Target:  5'- gGCUGCGccuccagccuGUGcGAGGCCuGCGGCGGcaccUGCu -3'
miRNA:   3'- -CGGCGC----------UAC-CUUCGG-CGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 134440 0.67 0.891565
Target:  5'- cCCGaCGAcggaGGAGGCgGCGGaGAUgGCg -3'
miRNA:   3'- cGGC-GCUa---CCUUCGgCGCCgCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 194718 0.67 0.891565
Target:  5'- cGCUGCGuccGGAGGCgGCGcuacaaggucuGCGAcgccgggcgUCGCg -3'
miRNA:   3'- -CGGCGCua-CCUUCGgCGC-----------CGCU---------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 114745 0.67 0.891565
Target:  5'- cGCCGUGggGGuGG-CGCGGCcacagCGCu -3'
miRNA:   3'- -CGGCGCuaCCuUCgGCGCCGcua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 183107 0.67 0.891565
Target:  5'- uCUGCGAcucguUGcucucacccGGuuGCGGCGGUCGCa -3'
miRNA:   3'- cGGCGCU-----ACcu-------UCggCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 46407 0.67 0.891565
Target:  5'- gGCgCGCGGgccaGGAAGCgGCgacgGGCGAagCGUa -3'
miRNA:   3'- -CG-GCGCUa---CCUUCGgCG----CCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 97573 0.67 0.891565
Target:  5'- gGCCGCgGAUGGAGGUgGUGaUGA-CGUg -3'
miRNA:   3'- -CGGCG-CUACCUUCGgCGCcGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 185773 0.67 0.873741
Target:  5'- gGCCGCGAUGGAgcgcaAgacgcgucucucggaGCCGCcgacgcuGGCGcugCGCc -3'
miRNA:   3'- -CGGCGCUACCU-----U---------------CGGCG-------CCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 141193 0.67 0.864653
Target:  5'- uUCGCG--GGuGGCCGUGGCGcugCGCc -3'
miRNA:   3'- cGGCGCuaCCuUCGGCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 34237 0.67 0.891565
Target:  5'- uGUCGCGAU---AGCCGgGGCcuGUCGUg -3'
miRNA:   3'- -CGGCGCUAccuUCGGCgCCGc-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 69738 0.67 0.891565
Target:  5'- aCgGCGGgcggGGAGGCgGCGGUGGcacaagUGCa -3'
miRNA:   3'- cGgCGCUa---CCUUCGgCGCCGCUa-----GCG- -5'
14189 3' -58.5 NC_003521.1 + 198210 0.67 0.871673
Target:  5'- gGCgGCGAcGGc-GCCGcCGGCGGcCGUg -3'
miRNA:   3'- -CGgCGCUaCCuuCGGC-GCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 181207 0.67 0.878501
Target:  5'- aGCCGCGGUcGccGCCGgGGCcgcCGCc -3'
miRNA:   3'- -CGGCGCUAcCuuCGGCgCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 223315 0.67 0.878501
Target:  5'- cGCCGcCGGgccgGGAAccGCCGUgaccGGCGG-CGCc -3'
miRNA:   3'- -CGGC-GCUa---CCUU--CGGCG----CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 40221 0.67 0.878501
Target:  5'- cCCGCGu--GAGGCgGgCaGCGGUCGCa -3'
miRNA:   3'- cGGCGCuacCUUCGgC-GcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 166239 0.67 0.884478
Target:  5'- gGCCGCG--GGAcGCCGCGcCGccgcuccGUCGCc -3'
miRNA:   3'- -CGGCGCuaCCUuCGGCGCcGC-------UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 209726 0.67 0.885132
Target:  5'- cGCCGCGuguaccGGccGCCGCcGUcGUCGCu -3'
miRNA:   3'- -CGGCGCua----CCuuCGGCGcCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 199377 0.67 0.885132
Target:  5'- aCCGUGGUGuaGAcGGCgGCGGgGGUCGa -3'
miRNA:   3'- cGGCGCUAC--CU-UCGgCGCCgCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 91034 0.67 0.885132
Target:  5'- gGCCGUucgcGGAAcGCCGUGGCGuugaggCGUa -3'
miRNA:   3'- -CGGCGcua-CCUU-CGGCGCCGCua----GCG- -5'
14189 3' -58.5 NC_003521.1 + 91976 0.67 0.884478
Target:  5'- uGgCGCGGUGcAcggcacgcaccucGGCCGagggcaGGCGGUCGCc -3'
miRNA:   3'- -CgGCGCUACcU-------------UCGGCg-----CCGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.