miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 216912 0.71 0.655045
Target:  5'- gGgCGCGGUGGcAGCgGaGGCGGUCGa -3'
miRNA:   3'- -CgGCGCUACCuUCGgCgCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 123694 0.71 0.655045
Target:  5'- cGUgGCGGUGGAagaggaggcggcGGCUgaGCGGCGGagGCg -3'
miRNA:   3'- -CGgCGCUACCU------------UCGG--CGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 89958 0.71 0.692481
Target:  5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3'
miRNA:   3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 139383 0.71 0.693434
Target:  5'- cGCCGUGcucuUGGcc-CCGCGGUGGUCGa -3'
miRNA:   3'- -CGGCGCu---ACCuucGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 36426 0.71 0.674301
Target:  5'- uUCGCGGUcGGAgGGCCGCGGagaCGAguugCGCu -3'
miRNA:   3'- cGGCGCUA-CCU-UCGGCGCC---GCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 140550 0.71 0.664684
Target:  5'- --gGCGGUGGcuGCUGCGGCGGcgGCg -3'
miRNA:   3'- cggCGCUACCuuCGGCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 37514 0.71 0.658903
Target:  5'- cCCGCGGacaucagcgacguccUGGggGUgggcaGCGGgGGUCGCg -3'
miRNA:   3'- cGGCGCU---------------ACCuuCGg----CGCCgCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 73138 0.7 0.712384
Target:  5'- aCgGCGggGGcAGCgGCGGCGG-CGCc -3'
miRNA:   3'- cGgCGCuaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 164427 0.7 0.728303
Target:  5'- cGCCGCuGGUGcuagcagcgccaccGcGGCCGCGGCcgucacGGUCGCc -3'
miRNA:   3'- -CGGCG-CUAC--------------CuUCGGCGCCG------CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 91993 0.7 0.731091
Target:  5'- cGgCGCGAacGGAGCgggaGCGGCGAggCGCg -3'
miRNA:   3'- -CgGCGCUacCUUCGg---CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 74574 0.7 0.731091
Target:  5'- gGCgGCGAcGGAgcGGCggCGCGGCGuccCGCg -3'
miRNA:   3'- -CGgCGCUaCCU--UCG--GCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 40875 0.7 0.721772
Target:  5'- aGCCGCGGagGGAAGggaCCGgGGCGGggGUc -3'
miRNA:   3'- -CGGCGCUa-CCUUC---GGCgCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 232870 0.7 0.740333
Target:  5'- gGCCGCGAca----CCGCGGCGAUCu- -3'
miRNA:   3'- -CGGCGCUaccuucGGCGCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 228737 0.7 0.749491
Target:  5'- gGCUGCG-UGGuGAGCaGCGGCGugCGCa -3'
miRNA:   3'- -CGGCGCuACC-UUCGgCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 118924 0.7 0.740333
Target:  5'- cGCCGCGgcGuGGGCgGCGGCGuccCGUc -3'
miRNA:   3'- -CGGCGCuaCcUUCGgCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 141347 0.7 0.721772
Target:  5'- uCUGCGGUucccacGGguGCgGCGGCGGUCGg -3'
miRNA:   3'- cGGCGCUA------CCuuCGgCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 196884 0.7 0.702936
Target:  5'- aCCGCGGguGAGGCCGgGGCgGAagGCg -3'
miRNA:   3'- cGGCGCUacCUUCGGCgCCG-CUagCG- -5'
14189 3' -58.5 NC_003521.1 + 112073 0.7 0.720836
Target:  5'- cGCCGCGGUGGGgaucaggGGCgGCuGGCGGg--- -3'
miRNA:   3'- -CGGCGCUACCU-------UCGgCG-CCGCUagcg -5'
14189 3' -58.5 NC_003521.1 + 119450 0.7 0.716147
Target:  5'- cUCGCGAUGGAggcgcgacagugugaAGCCGCG-CGGggcgUGCa -3'
miRNA:   3'- cGGCGCUACCU---------------UCGGCGCcGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 226364 0.7 0.712384
Target:  5'- cGCCGC---GGGAGCgGCGGCuGA-CGCc -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCG-CUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.