miRNA display CGI


Results 61 - 80 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 126423 0.73 0.577904
Target:  5'- -gCGCGAUGGcGGCCa-GGCGGUCGa -3'
miRNA:   3'- cgGCGCUACCuUCGGcgCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 216124 0.72 0.588448
Target:  5'- cGCgGCGc-GGAGGCCGCGGCaGAggaaggccaccugggCGCa -3'
miRNA:   3'- -CGgCGCuaCCUUCGGCGCCG-CUa--------------GCG- -5'
14189 3' -58.5 NC_003521.1 + 155243 0.72 0.596139
Target:  5'- uCCGUGGUGGuggugggGGGCgGCGGCGGcggCGCc -3'
miRNA:   3'- cGGCGCUACC-------UUCGgCGCCGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 76355 0.72 0.597102
Target:  5'- gGCUGCGgcGGcGGCaGCGGCGAcCGUg -3'
miRNA:   3'- -CGGCGCuaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 150565 0.72 0.597102
Target:  5'- --gGUGGUGGcGGCgGCGGCGG-CGCg -3'
miRNA:   3'- cggCGCUACCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 213596 0.72 0.597102
Target:  5'- aGCCgGCGAUGaccAGGCUguugggGUGGCGGUCGCc -3'
miRNA:   3'- -CGG-CGCUACc--UUCGG------CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 77094 0.72 0.597102
Target:  5'- uGCgGCGcAUGG-GGUCGCGGCacUCGCg -3'
miRNA:   3'- -CGgCGC-UACCuUCGGCGCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 216647 0.72 0.606738
Target:  5'- cGCCGgGAaagcGAAGacuccgcaucuCCGCGGUGGUCGCg -3'
miRNA:   3'- -CGGCgCUac--CUUC-----------GGCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 126568 0.72 0.606738
Target:  5'- gGCCGUGGgcagcgGGAAGCCGCcgucgugccGGUGGUagUGCg -3'
miRNA:   3'- -CGGCGCUa-----CCUUCGGCG---------CCGCUA--GCG- -5'
14189 3' -58.5 NC_003521.1 + 28089 0.72 0.606738
Target:  5'- aCgGCGG-GGAAGCCGagcaGGCGcUCGCc -3'
miRNA:   3'- cGgCGCUaCCUUCGGCg---CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 18717 0.72 0.606738
Target:  5'- gGCUGUGGcUGccgcuGGCgGCGGCGAUCGUg -3'
miRNA:   3'- -CGGCGCU-ACcu---UCGgCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 111193 0.72 0.606738
Target:  5'- cGCCGCGGacGGuGGGCUG-GGCGAUgGCg -3'
miRNA:   3'- -CGGCGCUa-CC-UUCGGCgCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 202016 0.72 0.616391
Target:  5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3'
miRNA:   3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 1789 0.72 0.616391
Target:  5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3'
miRNA:   3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 17773 0.72 0.616391
Target:  5'- uGCUGUGAcgaugaccUGGAGGCCGuCGGCG--UGCu -3'
miRNA:   3'- -CGGCGCU--------ACCUUCGGC-GCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 86199 0.72 0.626055
Target:  5'- gGCCaCGGUGGAGGCgaaggGCGGCGGcaCGCc -3'
miRNA:   3'- -CGGcGCUACCUUCGg----CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 187583 0.72 0.626055
Target:  5'- uCCGCGG-GGGcuUCGcCGGCGGUCGCu -3'
miRNA:   3'- cGGCGCUaCCUucGGC-GCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 131054 0.72 0.626055
Target:  5'- gGCgGCGGgccucUGGAcgcGGUgGCGGCGAcCGCg -3'
miRNA:   3'- -CGgCGCU-----ACCU---UCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 123588 0.72 0.626055
Target:  5'- gGCgGCGccGGGAGCCGCcGCGGcCGUc -3'
miRNA:   3'- -CGgCGCuaCCUUCGGCGcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 219780 0.72 0.626055
Target:  5'- cGCCuuugcgacaGCGGUGGAucucGCCGUGGCGuuaccCGCc -3'
miRNA:   3'- -CGG---------CGCUACCUu---CGGCGCCGCua---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.