miRNA display CGI


Results 81 - 100 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 74910 0.72 0.626055
Target:  5'- gGCgGCGGUGGAgucGGCC-CGGCag-CGCg -3'
miRNA:   3'- -CGgCGCUACCU---UCGGcGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 219780 0.72 0.626055
Target:  5'- cGCCuuugcgacaGCGGUGGAucucGCCGUGGCGuuaccCGCc -3'
miRNA:   3'- -CGG---------CGCUACCUu---CGGCGCCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 14727 0.72 0.634756
Target:  5'- cGCCGUGGuaucuguUGGGcgugacgggccGGCCGCGGcCGGggCGCg -3'
miRNA:   3'- -CGGCGCU-------ACCU-----------UCGGCGCC-GCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 101118 0.72 0.635723
Target:  5'- cCCGCGAgGGggGCgGguCGGCGGgcaCGCg -3'
miRNA:   3'- cGGCGCUaCCuuCGgC--GCCGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 209090 0.72 0.635723
Target:  5'- gGCgGCGGaGGcgguGGCCGCGGCGucccagcacgCGCa -3'
miRNA:   3'- -CGgCGCUaCCu---UCGGCGCCGCua--------GCG- -5'
14189 3' -58.5 NC_003521.1 + 191075 0.71 0.645389
Target:  5'- cGCgGCGAccgUGGuGGCgGCGGCGggCuGCg -3'
miRNA:   3'- -CGgCGCU---ACCuUCGgCGCCGCuaG-CG- -5'
14189 3' -58.5 NC_003521.1 + 72983 0.71 0.645389
Target:  5'- aGCCGaCGAgc----CCGCGGCGGUCGUg -3'
miRNA:   3'- -CGGC-GCUaccuucGGCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 216912 0.71 0.655045
Target:  5'- gGgCGCGGUGGcAGCgGaGGCGGUCGa -3'
miRNA:   3'- -CgGCGCUACCuUCGgCgCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 123694 0.71 0.655045
Target:  5'- cGUgGCGGUGGAagaggaggcggcGGCUgaGCGGCGGagGCg -3'
miRNA:   3'- -CGgCGCUACCU------------UCGG--CGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 84233 0.71 0.658903
Target:  5'- gGCCGCGcugcaccaccucgggGUGGAuGCgaUGGCGGUCGCu -3'
miRNA:   3'- -CGGCGC---------------UACCUuCGgcGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 121127 0.71 0.658903
Target:  5'- cGCUGUacUGGggGCCGCGcagcaugagcaugucGCGGUCGa -3'
miRNA:   3'- -CGGCGcuACCuuCGGCGC---------------CGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 37514 0.71 0.658903
Target:  5'- cCCGCGGacaucagcgacguccUGGggGUgggcaGCGGgGGUCGCg -3'
miRNA:   3'- cGGCGCU---------------ACCuuCGg----CGCCgCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 139753 0.71 0.662758
Target:  5'- gGCCGCGugccgacggcaGGAuccGGCCGuCGGCGGcCGCc -3'
miRNA:   3'- -CGGCGCua---------CCU---UCGGC-GCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 140550 0.71 0.664684
Target:  5'- --gGCGGUGGcuGCUGCGGCGGcgGCg -3'
miRNA:   3'- cggCGCUACCuuCGGCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 53372 0.71 0.664684
Target:  5'- gGCCGacagacCGAgcaGGAgcaGGCCGCGGCGAgcaggggauggCGCg -3'
miRNA:   3'- -CGGC------GCUa--CCU---UCGGCGCCGCUa----------GCG- -5'
14189 3' -58.5 NC_003521.1 + 198798 0.71 0.664684
Target:  5'- aGCUGCG-UGGu-GCCgGCGGCGucuGUCGUg -3'
miRNA:   3'- -CGGCGCuACCuuCGG-CGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 114955 0.71 0.664684
Target:  5'- cGCaGCGgcGGcuGCUGCGGCGucaGUCGCc -3'
miRNA:   3'- -CGgCGCuaCCuuCGGCGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 125206 0.71 0.664684
Target:  5'- gGCCGCcAUGGuGGCgGCGGCaa-CGCg -3'
miRNA:   3'- -CGGCGcUACCuUCGgCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 163961 0.71 0.664684
Target:  5'- gGCCGC---GGAcGCCGaagauGGCGGUCGCc -3'
miRNA:   3'- -CGGCGcuaCCUuCGGCg----CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 117486 0.71 0.664684
Target:  5'- gGCCGCGGcgcUGG-GGCCGuCGGUGuUCGg -3'
miRNA:   3'- -CGGCGCU---ACCuUCGGC-GCCGCuAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.