miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 36426 0.71 0.674301
Target:  5'- uUCGCGGUcGGAgGGCCGCGGagaCGAguugCGCu -3'
miRNA:   3'- cGGCGCUA-CCU-UCGGCGCC---GCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 132576 0.71 0.674301
Target:  5'- gGUCGacaccagaagaUGAUGGAAGCgGCGGCG-UCGg -3'
miRNA:   3'- -CGGC-----------GCUACCUUCGgCGCCGCuAGCg -5'
14189 3' -58.5 NC_003521.1 + 196727 0.71 0.683887
Target:  5'- gGCgGCGAcGGuGGUgGCGGCGG-CGCc -3'
miRNA:   3'- -CGgCGCUaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 183899 0.71 0.683887
Target:  5'- gGCCGaGGugcUGGAGgcgguGCUGCGGCGcuGUCGCg -3'
miRNA:   3'- -CGGCgCU---ACCUU-----CGGCGCCGC--UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 89958 0.71 0.692481
Target:  5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3'
miRNA:   3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 103380 0.71 0.693434
Target:  5'- aCCGUGucgGGcAGCCGCGcGUGcUCGCg -3'
miRNA:   3'- cGGCGCua-CCuUCGGCGC-CGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 139383 0.71 0.693434
Target:  5'- cGCCGUGcucuUGGcc-CCGCGGUGGUCGa -3'
miRNA:   3'- -CGGCGCu---ACCuucGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 196884 0.7 0.702936
Target:  5'- aCCGCGGguGAGGCCGgGGCgGAagGCg -3'
miRNA:   3'- cGGCGCUacCUUCGGCgCCG-CUagCG- -5'
14189 3' -58.5 NC_003521.1 + 72295 0.7 0.702936
Target:  5'- cGCCGCGcUGGccgccAGCCuGCuGGCG-UCGCc -3'
miRNA:   3'- -CGGCGCuACCu----UCGG-CG-CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 149758 0.7 0.702936
Target:  5'- uGCgGCGAgGGcGGCCGCG-CGGUaCGCc -3'
miRNA:   3'- -CGgCGCUaCCuUCGGCGCcGCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 60173 0.7 0.702936
Target:  5'- cGCCcCGGUaGcGAGCCGCGGCGugagaacgCGCg -3'
miRNA:   3'- -CGGcGCUA-CcUUCGGCGCCGCua------GCG- -5'
14189 3' -58.5 NC_003521.1 + 148784 0.7 0.702936
Target:  5'- gGUCGCGccGaGGAGCCGCGGC---UGCg -3'
miRNA:   3'- -CGGCGCuaC-CUUCGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 99208 0.7 0.706722
Target:  5'- gGCCGCGGcgcaguccUGGAugacgauagggcuguAGCUGaCGGUGcgCGCg -3'
miRNA:   3'- -CGGCGCU--------ACCU---------------UCGGC-GCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 72854 0.7 0.712384
Target:  5'- gGCgGCGAcGGuAGGCa-CGGCGGUCGUc -3'
miRNA:   3'- -CGgCGCUaCC-UUCGgcGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 73138 0.7 0.712384
Target:  5'- aCgGCGggGGcAGCgGCGGCGG-CGCc -3'
miRNA:   3'- cGgCGCuaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 226364 0.7 0.712384
Target:  5'- cGCCGC---GGGAGCgGCGGCuGA-CGCc -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCG-CUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 208197 0.7 0.712384
Target:  5'- cGCCGCGAUgacGGAA-CUGCaGCaGUCGCa -3'
miRNA:   3'- -CGGCGCUA---CCUUcGGCGcCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 172547 0.7 0.712384
Target:  5'- --gGCGggGGAucucguGCCGCugucccggggucGGCGGUCGCa -3'
miRNA:   3'- cggCGCuaCCUu-----CGGCG------------CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 119450 0.7 0.716147
Target:  5'- cUCGCGAUGGAggcgcgacagugugaAGCCGCG-CGGggcgUGCa -3'
miRNA:   3'- cGGCGCUACCU---------------UCGGCGCcGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 102753 0.7 0.718024
Target:  5'- gGCCaGCGccucagcuGuCCGCGGCGGUCGCg -3'
miRNA:   3'- -CGG-CGCuaccuu--C-GGCGCCGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.