miRNA display CGI


Results 121 - 140 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 112073 0.7 0.720836
Target:  5'- cGCCGCGGUGGGgaucaggGGCgGCuGGCGGg--- -3'
miRNA:   3'- -CGGCGCUACCU-------UCGgCG-CCGCUagcg -5'
14189 3' -58.5 NC_003521.1 + 143324 0.7 0.720836
Target:  5'- cCCGCGGUaGAgacAGCCGCcaccgauGGCGGcUCGCg -3'
miRNA:   3'- cGGCGCUAcCU---UCGGCG-------CCGCU-AGCG- -5'
14189 3' -58.5 NC_003521.1 + 40875 0.7 0.721772
Target:  5'- aGCCGCGGagGGAAGggaCCGgGGCGGggGUc -3'
miRNA:   3'- -CGGCGCUa-CCUUC---GGCgCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 141347 0.7 0.721772
Target:  5'- uCUGCGGUucccacGGguGCgGCGGCGGUCGg -3'
miRNA:   3'- cGGCGCUA------CCuuCGgCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 187100 0.7 0.721772
Target:  5'- -aCGCGAUGGAgucgAGCCagaaGCcacGUGAUCGCg -3'
miRNA:   3'- cgGCGCUACCU----UCGG----CGc--CGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 116684 0.7 0.721772
Target:  5'- aGCgGCGgcGGAGGCaGCGGCGcggGCg -3'
miRNA:   3'- -CGgCGCuaCCUUCGgCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 42628 0.7 0.721772
Target:  5'- gGCCGCug-GGAacacgucagcAGCCGCGGUGuaggCGUa -3'
miRNA:   3'- -CGGCGcuaCCU----------UCGGCGCCGCua--GCG- -5'
14189 3' -58.5 NC_003521.1 + 21654 0.7 0.721772
Target:  5'- aGCCGCcacUGGAAcacGCUGCGGCGccUGCu -3'
miRNA:   3'- -CGGCGcu-ACCUU---CGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 164427 0.7 0.728303
Target:  5'- cGCCGCuGGUGcuagcagcgccaccGcGGCCGCGGCcgucacGGUCGCc -3'
miRNA:   3'- -CGGCG-CUAC--------------CuUCGGCGCCG------CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 127912 0.7 0.730162
Target:  5'- cCCGUGAcGG-GGCCcucccagGCGGCGAucUCGCg -3'
miRNA:   3'- cGGCGCUaCCuUCGG-------CGCCGCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 223224 0.7 0.731091
Target:  5'- cGCCGCGAcgccUGGcgcguccAGCCGUGGCaacGAagGCg -3'
miRNA:   3'- -CGGCGCU----ACCu------UCGGCGCCG---CUagCG- -5'
14189 3' -58.5 NC_003521.1 + 91993 0.7 0.731091
Target:  5'- cGgCGCGAacGGAGCgggaGCGGCGAggCGCg -3'
miRNA:   3'- -CgGCGCUacCUUCGg---CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 74574 0.7 0.731091
Target:  5'- gGCgGCGAcGGAgcGGCggCGCGGCGuccCGCg -3'
miRNA:   3'- -CGgCGCUaCCU--UCG--GCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 160298 0.7 0.731091
Target:  5'- cGCCggcaagGCGGUGGGcacggccaucggAGCCGUGgGCGG-CGCg -3'
miRNA:   3'- -CGG------CGCUACCU------------UCGGCGC-CGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 111295 0.7 0.731091
Target:  5'- cGCCGCGAUGGAGaaCUGguCGGCGcUCGa -3'
miRNA:   3'- -CGGCGCUACCUUc-GGC--GCCGCuAGCg -5'
14189 3' -58.5 NC_003521.1 + 118924 0.7 0.740333
Target:  5'- cGCCGCGgcGuGGGCgGCGGCGuccCGUc -3'
miRNA:   3'- -CGGCGCuaCcUUCGgCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 122669 0.7 0.740333
Target:  5'- uGCgGCGGUGGGGuggcGUCGcCGGUGAUCa- -3'
miRNA:   3'- -CGgCGCUACCUU----CGGC-GCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 72985 0.7 0.740333
Target:  5'- gGCCGCGggGGGccuGGCCGCuccugcucuGGCuGAcaugCGCg -3'
miRNA:   3'- -CGGCGCuaCCU---UCGGCG---------CCG-CUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 197849 0.7 0.740333
Target:  5'- gGUCGuCGGUGGgcGCCgGCGG--GUCGCg -3'
miRNA:   3'- -CGGC-GCUACCuuCGG-CGCCgcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 232870 0.7 0.740333
Target:  5'- gGCCGCGAca----CCGCGGCGAUCu- -3'
miRNA:   3'- -CGGCGCUaccuucGGCGCCGCUAGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.