miRNA display CGI


Results 141 - 160 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 118924 0.7 0.740333
Target:  5'- cGCCGCGgcGuGGGCgGCGGCGuccCGUc -3'
miRNA:   3'- -CGGCGCuaCcUUCGgCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 122669 0.7 0.740333
Target:  5'- uGCgGCGGUGGGGuggcGUCGcCGGUGAUCa- -3'
miRNA:   3'- -CGgCGCUACCUU----CGGC-GCCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 100592 0.7 0.74858
Target:  5'- -aCGCGGaGGGAGCCGCcaucaugcugcacGGCGAcUCGg -3'
miRNA:   3'- cgGCGCUaCCUUCGGCG-------------CCGCU-AGCg -5'
14189 3' -58.5 NC_003521.1 + 223937 0.7 0.74858
Target:  5'- gGCCGaggggguCGA-GGcGGCCGCGGgGAaCGCa -3'
miRNA:   3'- -CGGC-------GCUaCCuUCGGCGCCgCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 228737 0.7 0.749491
Target:  5'- gGCUGCG-UGGuGAGCaGCGGCGugCGCa -3'
miRNA:   3'- -CGGCGCuACC-UUCGgCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 222992 0.7 0.749491
Target:  5'- cGCCcacuugguaugGCGGUGGggGUCGuCGuccgcCGGUCGCa -3'
miRNA:   3'- -CGG-----------CGCUACCuuCGGC-GCc----GCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 87096 0.7 0.749491
Target:  5'- gGCCaCGGUGGGcaucguGCCGCuGGUGGaCGCg -3'
miRNA:   3'- -CGGcGCUACCUu-----CGGCG-CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 28259 0.7 0.749491
Target:  5'- cGCCGaGA-GGAacAGCgGCGGCGAUgacaGCa -3'
miRNA:   3'- -CGGCgCUaCCU--UCGgCGCCGCUAg---CG- -5'
14189 3' -58.5 NC_003521.1 + 116357 0.69 0.758558
Target:  5'- aCCGCGAgc---GCgGCGGCGAaCGCg -3'
miRNA:   3'- cGGCGCUaccuuCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 79606 0.69 0.758558
Target:  5'- cGCCGCcAUcGAAcuuGCCGgGGCGAcCGCg -3'
miRNA:   3'- -CGGCGcUAcCUU---CGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 124599 0.69 0.758558
Target:  5'- gGCCGaCGAggacgacGAAGCgGCGGCGAcgGCg -3'
miRNA:   3'- -CGGC-GCUac-----CUUCGgCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 100716 0.69 0.766632
Target:  5'- gGCCGCuGAUGGAGGagGCGGgGGguucaugUCGUc -3'
miRNA:   3'- -CGGCG-CUACCUUCggCGCCgCU-------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 192824 0.69 0.767524
Target:  5'- aGCCGCa---GAAGCC-CGGCGG-CGCg -3'
miRNA:   3'- -CGGCGcuacCUUCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 127032 0.69 0.767524
Target:  5'- cGCCGCGGUGcccGUCGCgcuGGCcGUCGCc -3'
miRNA:   3'- -CGGCGCUACcuuCGGCG---CCGcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 89626 0.69 0.767524
Target:  5'- aCCGUGGUGGugaccGUCGCGGcCGAggaGCa -3'
miRNA:   3'- cGGCGCUACCuu---CGGCGCC-GCUag-CG- -5'
14189 3' -58.5 NC_003521.1 + 186841 0.69 0.767524
Target:  5'- cCUGCGaAUGGcGGCCcaGCGGCGGcgUGCa -3'
miRNA:   3'- cGGCGC-UACCuUCGG--CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 101801 0.69 0.767524
Target:  5'- gGgCGCGcacGAAGCCcagGgGGCGGUCGCg -3'
miRNA:   3'- -CgGCGCuacCUUCGG---CgCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 31720 0.69 0.767524
Target:  5'- uGCgCGUGcUGGGAcGCCGCGGCcacCGCc -3'
miRNA:   3'- -CG-GCGCuACCUU-CGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 134991 0.69 0.767524
Target:  5'- aGCCG-GuagcaggGGcAGGCCGUGGCG-UCGCc -3'
miRNA:   3'- -CGGCgCua-----CC-UUCGGCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 149620 0.69 0.767524
Target:  5'- -gCGCGAaacggcgcUGGAcGCCGcCGGCGAggUGCu -3'
miRNA:   3'- cgGCGCU--------ACCUuCGGC-GCCGCUa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.