Results 81 - 100 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14189 | 3' | -58.5 | NC_003521.1 | + | 167687 | 0.67 | 0.891565 |
Target: 5'- gGuuGCGGugacgacgcucgUGGAGGagGCGGCGGUaGCa -3' miRNA: 3'- -CggCGCU------------ACCUUCggCGCCGCUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 53503 | 0.67 | 0.891565 |
Target: 5'- gGCCGCu------GCUGCGGCG-UCGCa -3' miRNA: 3'- -CGGCGcuaccuuCGGCGCCGCuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 102442 | 0.67 | 0.891565 |
Target: 5'- -aCGCGccGcAGGCCGCGGCaGAUCu- -3' miRNA: 3'- cgGCGCuaCcUUCGGCGCCG-CUAGcg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 114745 | 0.67 | 0.891565 |
Target: 5'- cGCCGUGggGGuGG-CGCGGCcacagCGCu -3' miRNA: 3'- -CGGCGCuaCCuUCgGCGCCGcua--GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 194718 | 0.67 | 0.891565 |
Target: 5'- cGCUGCGuccGGAGGCgGCGcuacaaggucuGCGAcgccgggcgUCGCg -3' miRNA: 3'- -CGGCGCua-CCUUCGgCGC-----------CGCU---------AGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 46407 | 0.67 | 0.891565 |
Target: 5'- gGCgCGCGGgccaGGAAGCgGCgacgGGCGAagCGUa -3' miRNA: 3'- -CG-GCGCUa---CCUUCGgCG----CCGCUa-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 183107 | 0.67 | 0.891565 |
Target: 5'- uCUGCGAcucguUGcucucacccGGuuGCGGCGGUCGCa -3' miRNA: 3'- cGGCGCU-----ACcu-------UCggCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 34237 | 0.67 | 0.891565 |
Target: 5'- uGUCGCGAU---AGCCGgGGCcuGUCGUg -3' miRNA: 3'- -CGGCGCUAccuUCGGCgCCGc-UAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 69738 | 0.67 | 0.891565 |
Target: 5'- aCgGCGGgcggGGAGGCgGCGGUGGcacaagUGCa -3' miRNA: 3'- cGgCGCUa---CCUUCGgCGCCGCUa-----GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 97573 | 0.67 | 0.891565 |
Target: 5'- gGCCGCgGAUGGAGGUgGUGaUGA-CGUg -3' miRNA: 3'- -CGGCG-CUACCUUCGgCGCcGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 134440 | 0.67 | 0.891565 |
Target: 5'- cCCGaCGAcggaGGAGGCgGCGGaGAUgGCg -3' miRNA: 3'- cGGC-GCUa---CCUUCGgCGCCgCUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 207175 | 0.67 | 0.890931 |
Target: 5'- gGCCGUcugaauccagcggGAUGuGAGCCGCucGGCGGcaUCGUc -3' miRNA: 3'- -CGGCG-------------CUACcUUCGGCG--CCGCU--AGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 194534 | 0.67 | 0.885132 |
Target: 5'- cGCUGCGAUcGAAcugucuGCCGCGuCGggCGCc -3' miRNA: 3'- -CGGCGCUAcCUU------CGGCGCcGCuaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 199377 | 0.67 | 0.885132 |
Target: 5'- aCCGUGGUGuaGAcGGCgGCGGgGGUCGa -3' miRNA: 3'- cGGCGCUAC--CU-UCGgCGCCgCUAGCg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 145489 | 0.67 | 0.885132 |
Target: 5'- cGCUGCaGGUGG-AGCC-CuGCGcgCGCg -3' miRNA: 3'- -CGGCG-CUACCuUCGGcGcCGCuaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 209726 | 0.67 | 0.885132 |
Target: 5'- cGCCGCGuguaccGGccGCCGCcGUcGUCGCu -3' miRNA: 3'- -CGGCGCua----CCuuCGGCGcCGcUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 91034 | 0.67 | 0.885132 |
Target: 5'- gGCCGUucgcGGAAcGCCGUGGCGuugaggCGUa -3' miRNA: 3'- -CGGCGcua-CCUU-CGGCGCCGCua----GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 91976 | 0.67 | 0.884478 |
Target: 5'- uGgCGCGGUGcAcggcacgcaccucGGCCGagggcaGGCGGUCGCc -3' miRNA: 3'- -CgGCGCUACcU-------------UCGGCg-----CCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 166239 | 0.67 | 0.884478 |
Target: 5'- gGCCGCG--GGAcGCCGCGcCGccgcuccGUCGCc -3' miRNA: 3'- -CGGCGCuaCCUuCGGCGCcGC-------UAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 223315 | 0.67 | 0.878501 |
Target: 5'- cGCCGcCGGgccgGGAAccGCCGUgaccGGCGG-CGCc -3' miRNA: 3'- -CGGC-GCUa---CCUU--CGGCG----CCGCUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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