miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 96793 0.67 0.878501
Target:  5'- cGCCGCaGAccggaacggGGAAGCgCGCGuGUgGGUUGCa -3'
miRNA:   3'- -CGGCG-CUa--------CCUUCG-GCGC-CG-CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 99710 0.67 0.878501
Target:  5'- gGCCGCuucUGcAGGUCGCaGGCGucGUCGCg -3'
miRNA:   3'- -CGGCGcu-ACcUUCGGCG-CCGC--UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 149157 0.67 0.878501
Target:  5'- cGCUGCGGaaugcgccaGGGAGCCGCGGgca-CGCc -3'
miRNA:   3'- -CGGCGCUa--------CCUUCGGCGCCgcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 181207 0.67 0.878501
Target:  5'- aGCCGCGGUcGccGCCGgGGCcgcCGCc -3'
miRNA:   3'- -CGGCGCUAcCuuCGGCgCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 109723 0.67 0.878501
Target:  5'- aGCCGCGccGccccgccguccGGAGcCCGCGcgagccGCGGUCGCc -3'
miRNA:   3'- -CGGCGCuaC-----------CUUC-GGCGC------CGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 18748 0.67 0.878501
Target:  5'- gGCgGCGGUGGc-GCCGaCGG--GUCGCu -3'
miRNA:   3'- -CGgCGCUACCuuCGGC-GCCgcUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 240449 0.67 0.878501
Target:  5'- cCCGCGu--GAGGCgGgCaGCGGUCGCa -3'
miRNA:   3'- cGGCGCuacCUUCGgC-GcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 106820 0.67 0.878501
Target:  5'- uCCGCGAacucGGAgaugagagccuuGGCCGCGGCcagCGUc -3'
miRNA:   3'- cGGCGCUa---CCU------------UCGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 223315 0.67 0.878501
Target:  5'- cGCCGcCGGgccgGGAAccGCCGUgaccGGCGG-CGCc -3'
miRNA:   3'- -CGGC-GCUa---CCUU--CGGCG----CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 40221 0.67 0.878501
Target:  5'- cCCGCGu--GAGGCgGgCaGCGGUCGCa -3'
miRNA:   3'- cGGCGCuacCUUCGgC-GcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 185773 0.67 0.873741
Target:  5'- gGCCGCGAUGGAgcgcaAgacgcgucucucggaGCCGCcgacgcuGGCGcugCGCc -3'
miRNA:   3'- -CGGCGCUACCU-----U---------------CGGCG-------CCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 140597 0.67 0.872364
Target:  5'- gGCCgGCGAgacgcuccgcuucgaGGAGGCCGUaaauauGGCGcUCGUg -3'
miRNA:   3'- -CGG-CGCUa--------------CCUUCGGCG------CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 56314 0.67 0.871673
Target:  5'- -aCGUGAUGGAugaagaccaccgAGgCGCGGCcg-CGCa -3'
miRNA:   3'- cgGCGCUACCU------------UCgGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 112885 0.67 0.871673
Target:  5'- gGCCGaCGAcGucAGCCGCGa-GAUCGCc -3'
miRNA:   3'- -CGGC-GCUaCcuUCGGCGCcgCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 137468 0.67 0.871673
Target:  5'- aCCGaCGAgUGGAAgGgCGcCGGCGuGUCGCg -3'
miRNA:   3'- cGGC-GCU-ACCUU-CgGC-GCCGC-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 232704 0.67 0.871673
Target:  5'- cGCCGUcuggagaucuacGAUGGGcagacgacuccgAGCCGCuGCGAUCc- -3'
miRNA:   3'- -CGGCG------------CUACCU------------UCGGCGcCGCUAGcg -5'
14189 3' -58.5 NC_003521.1 + 153178 0.67 0.871673
Target:  5'- gGCUGCGccuccagccuGUGcGAGGCCuGCGGCGGcaccUGCu -3'
miRNA:   3'- -CGGCGC----------UAC-CUUCGG-CGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 106286 0.67 0.871673
Target:  5'- cGCCGUGGaGGGcaacagcaaccaGGCgGCGGCcGUgCGCa -3'
miRNA:   3'- -CGGCGCUaCCU------------UCGgCGCCGcUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 44485 0.67 0.871673
Target:  5'- uGCaCGCGcUGGAaaucgagcugcAGCCGCcgucgucaGGCGG-CGCa -3'
miRNA:   3'- -CG-GCGCuACCU-----------UCGGCG--------CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 198210 0.67 0.871673
Target:  5'- gGCgGCGAcGGc-GCCGcCGGCGGcCGUg -3'
miRNA:   3'- -CGgCGCUaCCuuCGGC-GCCGCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.