miRNA display CGI


Results 121 - 140 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 136002 0.67 0.867484
Target:  5'- gGCCGCGucacgcccGUGuucucggggaucagcGAGGUgGCGGUGAUCGa -3'
miRNA:   3'- -CGGCGC--------UAC---------------CUUCGgCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 103633 0.67 0.864653
Target:  5'- gGCCGcCGAcuccagcGGggGCagcucgGCGGCGGcCGCu -3'
miRNA:   3'- -CGGC-GCUa------CCuuCGg-----CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 175106 0.67 0.864653
Target:  5'- uGCCgGCcagGGccGCCGCGGCGc-CGCu -3'
miRNA:   3'- -CGG-CGcuaCCuuCGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 76944 0.67 0.864653
Target:  5'- aGCgCGCGGUGcGuuccagcauGUCGCGGCcGAUgCGCg -3'
miRNA:   3'- -CG-GCGCUAC-Cuu-------CGGCGCCG-CUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 187070 0.67 0.864653
Target:  5'- uGCCaGCGAgcGGAGGgCGCGGUucUCGg -3'
miRNA:   3'- -CGG-CGCUa-CCUUCgGCGCCGcuAGCg -5'
14189 3' -58.5 NC_003521.1 + 141193 0.67 0.864653
Target:  5'- uUCGCG--GGuGGCCGUGGCGcugCGCc -3'
miRNA:   3'- cGGCGCuaCCuUCGGCGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 133500 0.67 0.864653
Target:  5'- cGCCGCuGcUGcGggGCCcaacccGCGGCGAuUCGg -3'
miRNA:   3'- -CGGCG-CuAC-CuuCGG------CGCCGCU-AGCg -5'
14189 3' -58.5 NC_003521.1 + 150268 0.67 0.864653
Target:  5'- aCCGCGGccggccucucgUGGGugcuGUCGCGGgGccAUCGCg -3'
miRNA:   3'- cGGCGCU-----------ACCUu---CGGCGCCgC--UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 166209 0.67 0.864653
Target:  5'- cCCGCuguUGGc-GCgGCGGCGAggCGCg -3'
miRNA:   3'- cGGCGcu-ACCuuCGgCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 100422 0.67 0.864653
Target:  5'- aUgGUGGUGaGAAGaaGCGGCGG-CGCu -3'
miRNA:   3'- cGgCGCUAC-CUUCggCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 74357 0.67 0.864653
Target:  5'- uGCUGCGcgGcuacGGCCaguGCGGCGAcggcUCGCc -3'
miRNA:   3'- -CGGCGCuaCcu--UCGG---CGCCGCU----AGCG- -5'
14189 3' -58.5 NC_003521.1 + 44354 0.67 0.864653
Target:  5'- uCCGCGAcgcgcUGG-GGCUGCGGCccaCGCc -3'
miRNA:   3'- cGGCGCU-----ACCuUCGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 44245 0.67 0.864653
Target:  5'- cGCCGUGcgcGGGAGUC-CGGCGucaCGCc -3'
miRNA:   3'- -CGGCGCua-CCUUCGGcGCCGCua-GCG- -5'
14189 3' -58.5 NC_003521.1 + 86685 0.67 0.864653
Target:  5'- cGUCGuCGuaucUGGcGGGCCGCGGCGG-CGa -3'
miRNA:   3'- -CGGC-GCu---ACC-UUCGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 95881 0.67 0.864653
Target:  5'- cGUCGCGAgcc-AG-CGCGGCGAcgCGCg -3'
miRNA:   3'- -CGGCGCUaccuUCgGCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 57120 0.67 0.864653
Target:  5'- -aCGCGAgggGGAAuCCGCGGUGggUGg -3'
miRNA:   3'- cgGCGCUa--CCUUcGGCGCCGCuaGCg -5'
14189 3' -58.5 NC_003521.1 + 137156 0.67 0.864653
Target:  5'- cCCGCcAUGGccgcGGCCGCaGCGGcCGCc -3'
miRNA:   3'- cGGCGcUACCu---UCGGCGcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 77959 0.67 0.857447
Target:  5'- uGCUGgGucuUGGAgccGGCCGCGG-GcUCGCc -3'
miRNA:   3'- -CGGCgCu--ACCU---UCGGCGCCgCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 31898 0.67 0.857447
Target:  5'- gGCCGCGGcacaGGAA-CUGCGGCaGGcagCGCg -3'
miRNA:   3'- -CGGCGCUa---CCUUcGGCGCCG-CUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 17442 0.67 0.857447
Target:  5'- cCCGCGucgGGgcGCCGCGaUG-UCGCu -3'
miRNA:   3'- cGGCGCua-CCuuCGGCGCcGCuAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.