miRNA display CGI


Results 61 - 80 of 394 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 49575 0.75 0.466995
Target:  5'- uGCCGCG-UGG--GCCGCGGCGc-CGCc -3'
miRNA:   3'- -CGGCGCuACCuuCGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 50507 0.81 0.216239
Target:  5'- gGCgGCGGUGGAgaugguaccaaugGGCCGCGGgGuUCGCg -3'
miRNA:   3'- -CGgCGCUACCU-------------UCGGCGCCgCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 53182 0.66 0.920626
Target:  5'- cGCCGaugaaGAUGGccAGCgGCGcGCGGcccggcUCGCc -3'
miRNA:   3'- -CGGCg----CUACCu-UCGgCGC-CGCU------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 53372 0.71 0.664684
Target:  5'- gGCCGacagacCGAgcaGGAgcaGGCCGCGGCGAgcaggggauggCGCg -3'
miRNA:   3'- -CGGC------GCUa--CCU---UCGGCGCCGCUa----------GCG- -5'
14189 3' -58.5 NC_003521.1 + 53503 0.67 0.891565
Target:  5'- gGCCGCu------GCUGCGGCG-UCGCa -3'
miRNA:   3'- -CGGCGcuaccuuCGGCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 54428 0.66 0.89718
Target:  5'- -aCGCcGUGGAAGCUgacgcgguuguugGCGGUGAauuccagcUCGCu -3'
miRNA:   3'- cgGCGcUACCUUCGG-------------CGCCGCU--------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 56314 0.67 0.871673
Target:  5'- -aCGUGAUGGAugaagaccaccgAGgCGCGGCcg-CGCa -3'
miRNA:   3'- cgGCGCUACCU------------UCgGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 57120 0.67 0.864653
Target:  5'- -aCGCGAgggGGAAuCCGCGGUGggUGg -3'
miRNA:   3'- cgGCGCUa--CCUUcGGCGCCGCuaGCg -5'
14189 3' -58.5 NC_003521.1 + 59557 0.66 0.915234
Target:  5'- cCCGCGuccGgcGCCGCGGgGGuuUCGUc -3'
miRNA:   3'- cGGCGCuacCuuCGGCGCCgCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 59595 0.66 0.914683
Target:  5'- cGCCaaGAaGGAcgguaguggcggcGGCCccgGCGGCGAcCGCg -3'
miRNA:   3'- -CGGcgCUaCCU-------------UCGG---CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 60173 0.7 0.702936
Target:  5'- cGCCcCGGUaGcGAGCCGCGGCGugagaacgCGCg -3'
miRNA:   3'- -CGGcGCUA-CcUUCGGCGCCGCua------GCG- -5'
14189 3' -58.5 NC_003521.1 + 60234 0.67 0.894081
Target:  5'- aGCUGCGGUcucGAGGCUGaCGGCGcuauaagauacaucUCGCg -3'
miRNA:   3'- -CGGCGCUAc--CUUCGGC-GCCGCu-------------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 60691 0.74 0.530606
Target:  5'- gGCCGCGcgGGGGaCCcggggGCGGCGcggGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUUcGG-----CGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 64727 0.66 0.909631
Target:  5'- aGCUGagcaagaaGAUGGAcGCCGUGGCcaaGA-CGCc -3'
miRNA:   3'- -CGGCg-------CUACCUuCGGCGCCG---CUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 66747 0.68 0.834758
Target:  5'- uGCCGCGAcUGGAcgacaucCCGCGGgUGAUgcCGCc -3'
miRNA:   3'- -CGGCGCU-ACCUuc-----GGCGCC-GCUA--GCG- -5'
14189 3' -58.5 NC_003521.1 + 69738 0.67 0.891565
Target:  5'- aCgGCGGgcggGGAGGCgGCGGUGGcacaagUGCa -3'
miRNA:   3'- cGgCGCUa---CCUUCGgCGCCGCUa-----GCG- -5'
14189 3' -58.5 NC_003521.1 + 70128 0.75 0.466995
Target:  5'- gGCCGCuaucagGGccucGAGCUGCGGCGAgCGCg -3'
miRNA:   3'- -CGGCGcua---CC----UUCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 72295 0.7 0.702936
Target:  5'- cGCCGCGcUGGccgccAGCCuGCuGGCG-UCGCc -3'
miRNA:   3'- -CGGCGCuACCu----UCGG-CG-CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 72533 0.73 0.576947
Target:  5'- aGCUGC---GGAGGCgGCGGCGAcggugucgucgucUCGCg -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCGCU-------------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 72854 0.7 0.712384
Target:  5'- gGCgGCGAcGGuAGGCa-CGGCGGUCGUc -3'
miRNA:   3'- -CGgCGCUaCC-UUCGgcGCCGCUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.