miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 77959 0.67 0.857447
Target:  5'- uGCUGgGucuUGGAgccGGCCGCGG-GcUCGCc -3'
miRNA:   3'- -CGGCgCu--ACCU---UCGGCGCCgCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 78130 0.68 0.826859
Target:  5'- aCCuuGGUGGGcgcguuAGCgGCGGCGGcCGCg -3'
miRNA:   3'- cGGcgCUACCU------UCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 79018 0.68 0.842493
Target:  5'- aGCCGUaGAUGGAGGUCuuGGUGGccggCGUg -3'
miRNA:   3'- -CGGCG-CUACCUUCGGcgCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 79606 0.69 0.758558
Target:  5'- cGCCGCcAUcGAAcuuGCCGgGGCGAcCGCg -3'
miRNA:   3'- -CGGCGcUAcCUU---CGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 81076 0.67 0.878501
Target:  5'- cGUCGCccauGAAGCgCGCGGCGAUgGg -3'
miRNA:   3'- -CGGCGcuacCUUCG-GCGCCGCUAgCg -5'
14189 3' -58.5 NC_003521.1 + 82844 0.7 0.740333
Target:  5'- cGCCGCG-----GGCgGCGGCG-UCGCu -3'
miRNA:   3'- -CGGCGCuaccuUCGgCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 83749 0.66 0.897794
Target:  5'- aCCGCG--GGggGCCugggacaggGUGGCGG-CGCc -3'
miRNA:   3'- cGGCGCuaCCuuCGG---------CGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 84074 0.66 0.903817
Target:  5'- gGCUcuugGCGAUGGucauGGCCGUGcGCGAggUCa- -3'
miRNA:   3'- -CGG----CGCUACCu---UCGGCGC-CGCU--AGcg -5'
14189 3' -58.5 NC_003521.1 + 84233 0.71 0.658903
Target:  5'- gGCCGCGcugcaccaccucgggGUGGAuGCgaUGGCGGUCGCu -3'
miRNA:   3'- -CGGCGC---------------UACCUuCGgcGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 86199 0.72 0.626055
Target:  5'- gGCCaCGGUGGAGGCgaaggGCGGCGGcaCGCc -3'
miRNA:   3'- -CGGcGCUACCUUCGg----CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 86685 0.67 0.864653
Target:  5'- cGUCGuCGuaucUGGcGGGCCGCGGCGG-CGa -3'
miRNA:   3'- -CGGC-GCu---ACC-UUCGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 86904 0.68 0.818801
Target:  5'- gGCCGaggaGUGGAAGCUGCacGCGG-CGCu -3'
miRNA:   3'- -CGGCgc--UACCUUCGGCGc-CGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 87096 0.7 0.749491
Target:  5'- gGCCaCGGUGGGcaucguGCCGCuGGUGGaCGCg -3'
miRNA:   3'- -CGGcGCUACCUu-----CGGCG-CCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 87374 0.68 0.818801
Target:  5'- gGCCGaGGUGGAGGacgagGCGGCGGagGUg -3'
miRNA:   3'- -CGGCgCUACCUUCgg---CGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 88052 0.76 0.424055
Target:  5'- aGCgCGCGGauGAGGUCGCGGUGGUCGg -3'
miRNA:   3'- -CG-GCGCUacCUUCGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 89626 0.69 0.767524
Target:  5'- aCCGUGGUGGugaccGUCGCGGcCGAggaGCa -3'
miRNA:   3'- cGGCGCUACCuu---CGGCGCC-GCUag-CG- -5'
14189 3' -58.5 NC_003521.1 + 89842 0.66 0.903817
Target:  5'- cGCCGUagccGAUGucGGCCGCcaGCGccgcGUCGCg -3'
miRNA:   3'- -CGGCG----CUACcuUCGGCGc-CGC----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 89958 0.71 0.692481
Target:  5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3'
miRNA:   3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 90572 0.66 0.897794
Target:  5'- gGCCGCGGUGcAGGCCGaC-GUGA-CGUg -3'
miRNA:   3'- -CGGCGCUACcUUCGGC-GcCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 91034 0.67 0.885132
Target:  5'- gGCCGUucgcGGAAcGCCGUGGCGuugaggCGUa -3'
miRNA:   3'- -CGGCGcua-CCUU-CGGCGCCGCua----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.