miRNA display CGI


Results 121 - 140 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 91862 0.68 0.842493
Target:  5'- gGCgGCGGaccaGGAcGGCgGCGGCGGU-GCg -3'
miRNA:   3'- -CGgCGCUa---CCU-UCGgCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 91907 0.81 0.227
Target:  5'- cGCUGCGGUGcucGAuGCCGCGGCGG-CGCu -3'
miRNA:   3'- -CGGCGCUAC---CUuCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 91976 0.67 0.884478
Target:  5'- uGgCGCGGUGcAcggcacgcaccucGGCCGagggcaGGCGGUCGCc -3'
miRNA:   3'- -CgGCGCUACcU-------------UCGGCg-----CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 91993 0.7 0.731091
Target:  5'- cGgCGCGAacGGAGCgggaGCGGCGAggCGCg -3'
miRNA:   3'- -CgGCGCUacCUUCGg---CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 92237 0.69 0.802239
Target:  5'- gGCC-CGAcGGgcGCCGCgcggucuuuuGGCcGGUCGCg -3'
miRNA:   3'- -CGGcGCUaCCuuCGGCG----------CCG-CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 92288 0.68 0.842493
Target:  5'- aCCGCGuccucggGGAAGgCGCGG-GAggaggCGCa -3'
miRNA:   3'- cGGCGCua-----CCUUCgGCGCCgCUa----GCG- -5'
14189 3' -58.5 NC_003521.1 + 94140 0.68 0.818801
Target:  5'- aCCGUGcucaGGGAGCUGCGGuCGGcuUCGUu -3'
miRNA:   3'- cGGCGCua--CCUUCGGCGCC-GCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 94702 0.66 0.909631
Target:  5'- gGCCGacaccagauagaCGGUGGGcaGGUCGCGGaaauCGAUcCGCu -3'
miRNA:   3'- -CGGC------------GCUACCU--UCGGCGCC----GCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 95522 0.66 0.909631
Target:  5'- gGCCGaacUGGAuGCC-CGGCGAgacgccggCGCg -3'
miRNA:   3'- -CGGCgcuACCUuCGGcGCCGCUa-------GCG- -5'
14189 3' -58.5 NC_003521.1 + 95837 0.68 0.842493
Target:  5'- gGCCuCGGUGGcauGCCGCuGGCucaggauGUCGCg -3'
miRNA:   3'- -CGGcGCUACCuu-CGGCG-CCGc------UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 95881 0.67 0.864653
Target:  5'- cGUCGCGAgcc-AG-CGCGGCGAcgCGCg -3'
miRNA:   3'- -CGGCGCUaccuUCgGCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 96782 0.68 0.842493
Target:  5'- cGCCGCc--GGcAGCaGCGGCGG-CGCu -3'
miRNA:   3'- -CGGCGcuaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 96793 0.67 0.878501
Target:  5'- cGCCGCaGAccggaacggGGAAGCgCGCGuGUgGGUUGCa -3'
miRNA:   3'- -CGGCG-CUa--------CCUUCG-GCGC-CG-CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 97112 0.68 0.826859
Target:  5'- gGCCaGCGugcaGAAGgCGCGGCGGUaGCu -3'
miRNA:   3'- -CGG-CGCuac-CUUCgGCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 97268 0.74 0.500168
Target:  5'- cGCCaGCGAUGGcGGCUgcugcucgucgccgGCGGCGcgCGUg -3'
miRNA:   3'- -CGG-CGCUACCuUCGG--------------CGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 97573 0.67 0.891565
Target:  5'- gGCCGCgGAUGGAGGUgGUGaUGA-CGUg -3'
miRNA:   3'- -CGGCG-CUACCUUCGgCGCcGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 98440 0.66 0.906167
Target:  5'- gGCCGCGGccuccugggcuacguUGGAGGagGCGGCGGc--- -3'
miRNA:   3'- -CGGCGCU---------------ACCUUCggCGCCGCUagcg -5'
14189 3' -58.5 NC_003521.1 + 98479 0.78 0.310638
Target:  5'- gGCCGCGgcGGccGUgGCGGCGGccUCGCg -3'
miRNA:   3'- -CGGCGCuaCCuuCGgCGCCGCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 98614 0.68 0.850058
Target:  5'- gGCCaugGCGA-GGAgggcgagagcGGCgGCGGCGGUaGCg -3'
miRNA:   3'- -CGG---CGCUaCCU----------UCGgCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 98738 0.66 0.897794
Target:  5'- uGCCGCGggGGuGGUCGUcGUaGUCGUa -3'
miRNA:   3'- -CGGCGCuaCCuUCGGCGcCGcUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.