miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 169620 0.73 0.558844
Target:  5'- cGCCGUGGUGGAGguguacgguGCUGuuGUGGUCGUa -3'
miRNA:   3'- -CGGCGCUACCUU---------CGGCgcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 168553 0.66 0.909631
Target:  5'- gGCgGCGcUGGcGGGCUGCGGguaaGGUgGCg -3'
miRNA:   3'- -CGgCGCuACC-UUCGGCGCCg---CUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 168497 0.68 0.818801
Target:  5'- gGCgGCGAgacGGAGGCgGaggaCGGCGA-CGCc -3'
miRNA:   3'- -CGgCGCUa--CCUUCGgC----GCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 168408 0.75 0.479417
Target:  5'- cGCCGuUGGUGGcuagggcgggcggcaGGGCCGCGGCGGcgggCGUg -3'
miRNA:   3'- -CGGC-GCUACC---------------UUCGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 167987 0.7 0.740333
Target:  5'- cGCCGCGcccaGGccGUCGCGGUGAgccUGCu -3'
miRNA:   3'- -CGGCGCua--CCuuCGGCGCCGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 167723 0.66 0.920626
Target:  5'- gGCCaCGGUGGAuugcguggcGCUGCGGUGGcCGg -3'
miRNA:   3'- -CGGcGCUACCUu--------CGGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 167687 0.67 0.891565
Target:  5'- gGuuGCGGugacgacgcucgUGGAGGagGCGGCGGUaGCa -3'
miRNA:   3'- -CggCGCU------------ACCUUCggCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 167163 0.76 0.424055
Target:  5'- cGCCucggGCGucuUGGAggcGGCCGCGGCGGagGCc -3'
miRNA:   3'- -CGG----CGCu--ACCU---UCGGCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 166853 0.68 0.850058
Target:  5'- cGCagGCGGUGG----CGCGGCGggCGCa -3'
miRNA:   3'- -CGg-CGCUACCuucgGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 166640 0.77 0.368103
Target:  5'- gGCCGCGcgccGGgcGCCGCGGCGca-GCg -3'
miRNA:   3'- -CGGCGCua--CCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 166401 0.68 0.807268
Target:  5'- aGCUGCGucaagucguAGCCGCGGCacaGGUCGUc -3'
miRNA:   3'- -CGGCGCuaccu----UCGGCGCCG---CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 166239 0.67 0.884478
Target:  5'- gGCCGCG--GGAcGCCGCGcCGccgcuccGUCGCc -3'
miRNA:   3'- -CGGCGCuaCCUuCGGCGCcGC-------UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 166209 0.67 0.864653
Target:  5'- cCCGCuguUGGc-GCgGCGGCGAggCGCg -3'
miRNA:   3'- cGGCGcu-ACCuuCGgCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 166124 0.68 0.826859
Target:  5'- aGCCGCu------GCCGCGGCGccgccGUCGCu -3'
miRNA:   3'- -CGGCGcuaccuuCGGCGCCGC-----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 165020 0.75 0.449542
Target:  5'- gGCCGCGAUc---GCCGCGGCuuccAUCGCg -3'
miRNA:   3'- -CGGCGCUAccuuCGGCGCCGc---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 165012 0.66 0.895947
Target:  5'- gGCCGCaagGAcagguuccucagcaUGGugcuGCCGCGGCG-UCuGCa -3'
miRNA:   3'- -CGGCG---CU--------------ACCuu--CGGCGCCGCuAG-CG- -5'
14189 3' -58.5 NC_003521.1 + 164427 0.7 0.728303
Target:  5'- cGCCGCuGGUGcuagcagcgccaccGcGGCCGCGGCcgucacGGUCGCc -3'
miRNA:   3'- -CGGCG-CUAC--------------CuUCGGCGCCG------CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 164215 0.69 0.767524
Target:  5'- gGCgGCGGUGGuAGCgGCGGCuGGaCGg -3'
miRNA:   3'- -CGgCGCUACCuUCGgCGCCG-CUaGCg -5'
14189 3' -58.5 NC_003521.1 + 163961 0.71 0.664684
Target:  5'- gGCCGC---GGAcGCCGaagauGGCGGUCGCc -3'
miRNA:   3'- -CGGCGcuaCCUuCGGCg----CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 163463 0.66 0.910201
Target:  5'- cCCGUGGUGGGcuacuacaacgaccCCGUGGCGGUCu- -3'
miRNA:   3'- cGGCGCUACCUuc------------GGCGCCGCUAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.