miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 88052 0.76 0.424055
Target:  5'- aGCgCGCGGauGAGGUCGCGGUGGUCGg -3'
miRNA:   3'- -CG-GCGCUacCUUCGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 90 0.76 0.424055
Target:  5'- uGCCGCGGgcgugcagGGAGGCCgaaGCGGCGGcCGg -3'
miRNA:   3'- -CGGCGCUa-------CCUUCGG---CGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 135809 0.76 0.407551
Target:  5'- aGCgGCGGaGGGAGgCGCGGCGAcgaaCGCu -3'
miRNA:   3'- -CGgCGCUaCCUUCgGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 116466 0.77 0.37578
Target:  5'- gGCCGUGGUGGGAcacGUgGCGGCGAUgaagaGCg -3'
miRNA:   3'- -CGGCGCUACCUU---CGgCGCCGCUAg----CG- -5'
14189 3' -58.5 NC_003521.1 + 116384 0.78 0.309292
Target:  5'- uGCCGCGcgacgugGUGGAacguugguuggguAGCgGCGGCGAUgGCa -3'
miRNA:   3'- -CGGCGC-------UACCU-------------UCGgCGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 60691 0.74 0.530606
Target:  5'- gGCCGCGcgGGGGaCCcggggGCGGCGcggGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUUcGG-----CGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 152356 0.73 0.539965
Target:  5'- cGCUGCucUGGGgccGGCCGgGGCGG-CGCg -3'
miRNA:   3'- -CGGCGcuACCU---UCGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 126568 0.72 0.606738
Target:  5'- gGCCGUGGgcagcgGGAAGCCGCcgucgugccGGUGGUagUGCg -3'
miRNA:   3'- -CGGCGCUa-----CCUUCGGCG---------CCGCUA--GCG- -5'
14189 3' -58.5 NC_003521.1 + 111193 0.72 0.606738
Target:  5'- cGCCGCGGacGGuGGGCUG-GGCGAUgGCg -3'
miRNA:   3'- -CGGCGCUa-CC-UUCGGCgCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 18717 0.72 0.606738
Target:  5'- gGCUGUGGcUGccgcuGGCgGCGGCGAUCGUg -3'
miRNA:   3'- -CGGCGCU-ACcu---UCGgCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 28089 0.72 0.606738
Target:  5'- aCgGCGG-GGAAGCCGagcaGGCGcUCGCc -3'
miRNA:   3'- cGgCGCUaCCUUCGGCg---CCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 150565 0.72 0.597102
Target:  5'- --gGUGGUGGcGGCgGCGGCGG-CGCg -3'
miRNA:   3'- cggCGCUACCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 213596 0.72 0.597102
Target:  5'- aGCCgGCGAUGaccAGGCUguugggGUGGCGGUCGCc -3'
miRNA:   3'- -CGG-CGCUACc--UUCGG------CGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 77094 0.72 0.597102
Target:  5'- uGCgGCGcAUGG-GGUCGCGGCacUCGCg -3'
miRNA:   3'- -CGgCGC-UACCuUCGGCGCCGcuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 216124 0.72 0.588448
Target:  5'- cGCgGCGc-GGAGGCCGCGGCaGAggaaggccaccugggCGCa -3'
miRNA:   3'- -CGgCGCuaCCUUCGGCGCCG-CUa--------------GCG- -5'
14189 3' -58.5 NC_003521.1 + 72533 0.73 0.576947
Target:  5'- aGCUGC---GGAGGCgGCGGCGAcggugucgucgucUCGCg -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCGCU-------------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 124419 0.73 0.574079
Target:  5'- aGCCGCGAgaucuccucguccGGcgagacgugguuGGGCCGCGGCGGcaCGCg -3'
miRNA:   3'- -CGGCGCUa------------CC------------UUCGGCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 169620 0.73 0.558844
Target:  5'- cGCCGUGGUGGAGguguacgguGCUGuuGUGGUCGUa -3'
miRNA:   3'- -CGGCGCUACCUU---------CGGCgcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 133169 0.73 0.558844
Target:  5'- aGCCGgGAcaccagcagUGGcGGCCuCGGCGAUCGg -3'
miRNA:   3'- -CGGCgCU---------ACCuUCGGcGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 112820 0.73 0.558844
Target:  5'- gGCCGCGAccccccGGAuuCCGUGGCGggCGUc -3'
miRNA:   3'- -CGGCGCUa-----CCUucGGCGCCGCuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.