Results 61 - 80 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14189 | 3' | -58.5 | NC_003521.1 | + | 124419 | 0.73 | 0.574079 |
Target: 5'- aGCCGCGAgaucuccucguccGGcgagacgugguuGGGCCGCGGCGGcaCGCg -3' miRNA: 3'- -CGGCGCUa------------CC------------UUCGGCGCCGCUa-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 72533 | 0.73 | 0.576947 |
Target: 5'- aGCUGC---GGAGGCgGCGGCGAcggugucgucgucUCGCg -3' miRNA: 3'- -CGGCGcuaCCUUCGgCGCCGCU-------------AGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 86199 | 0.72 | 0.626055 |
Target: 5'- gGCCaCGGUGGAGGCgaaggGCGGCGGcaCGCc -3' miRNA: 3'- -CGGcGCUACCUUCGg----CGCCGCUa-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 131054 | 0.72 | 0.626055 |
Target: 5'- gGCgGCGGgccucUGGAcgcGGUgGCGGCGAcCGCg -3' miRNA: 3'- -CGgCGCU-----ACCU---UCGgCGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 219780 | 0.72 | 0.626055 |
Target: 5'- cGCCuuugcgacaGCGGUGGAucucGCCGUGGCGuuaccCGCc -3' miRNA: 3'- -CGG---------CGCUACCUu---CGGCGCCGCua---GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 187583 | 0.72 | 0.626055 |
Target: 5'- uCCGCGG-GGGcuUCGcCGGCGGUCGCu -3' miRNA: 3'- cGGCGCUaCCUucGGC-GCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 101118 | 0.72 | 0.635723 |
Target: 5'- cCCGCGAgGGggGCgGguCGGCGGgcaCGCg -3' miRNA: 3'- cGGCGCUaCCuuCGgC--GCCGCUa--GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 72983 | 0.71 | 0.645389 |
Target: 5'- aGCCGaCGAgc----CCGCGGCGGUCGUg -3' miRNA: 3'- -CGGC-GCUaccuucGGCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 191075 | 0.71 | 0.645389 |
Target: 5'- cGCgGCGAccgUGGuGGCgGCGGCGggCuGCg -3' miRNA: 3'- -CGgCGCU---ACCuUCGgCGCCGCuaG-CG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 121127 | 0.71 | 0.658903 |
Target: 5'- cGCUGUacUGGggGCCGCGcagcaugagcaugucGCGGUCGa -3' miRNA: 3'- -CGGCGcuACCuuCGGCGC---------------CGCUAGCg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 202016 | 0.72 | 0.616391 |
Target: 5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3' miRNA: 3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 216647 | 0.72 | 0.606738 |
Target: 5'- cGCCGgGAaagcGAAGacuccgcaucuCCGCGGUGGUCGCg -3' miRNA: 3'- -CGGCgCUac--CUUC-----------GGCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 216124 | 0.72 | 0.588448 |
Target: 5'- cGCgGCGc-GGAGGCCGCGGCaGAggaaggccaccugggCGCa -3' miRNA: 3'- -CGgCGCuaCCUUCGGCGCCG-CUa--------------GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 77094 | 0.72 | 0.597102 |
Target: 5'- uGCgGCGcAUGG-GGUCGCGGCacUCGCg -3' miRNA: 3'- -CGgCGC-UACCuUCGGCGCCGcuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 213596 | 0.72 | 0.597102 |
Target: 5'- aGCCgGCGAUGaccAGGCUguugggGUGGCGGUCGCc -3' miRNA: 3'- -CGG-CGCUACc--UUCGG------CGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 150565 | 0.72 | 0.597102 |
Target: 5'- --gGUGGUGGcGGCgGCGGCGG-CGCg -3' miRNA: 3'- cggCGCUACCuUCGgCGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 28089 | 0.72 | 0.606738 |
Target: 5'- aCgGCGG-GGAAGCCGagcaGGCGcUCGCc -3' miRNA: 3'- cGgCGCUaCCUUCGGCg---CCGCuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 18717 | 0.72 | 0.606738 |
Target: 5'- gGCUGUGGcUGccgcuGGCgGCGGCGAUCGUg -3' miRNA: 3'- -CGGCGCU-ACcu---UCGgCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 111193 | 0.72 | 0.606738 |
Target: 5'- cGCCGCGGacGGuGGGCUG-GGCGAUgGCg -3' miRNA: 3'- -CGGCGCUa-CC-UUCGGCgCCGCUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 126568 | 0.72 | 0.606738 |
Target: 5'- gGCCGUGGgcagcgGGAAGCCGCcgucgugccGGUGGUagUGCg -3' miRNA: 3'- -CGGCGCUa-----CCUUCGGCG---------CCGCUA--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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