Results 81 - 100 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14189 | 3' | -58.5 | NC_003521.1 | + | 132576 | 0.71 | 0.674301 |
Target: 5'- gGUCGacaccagaagaUGAUGGAAGCgGCGGCG-UCGg -3' miRNA: 3'- -CGGC-----------GCUACCUUCGgCGCCGCuAGCg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 196727 | 0.71 | 0.683887 |
Target: 5'- gGCgGCGAcGGuGGUgGCGGCGG-CGCc -3' miRNA: 3'- -CGgCGCUaCCuUCGgCGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 89958 | 0.71 | 0.692481 |
Target: 5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3' miRNA: 3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 103380 | 0.71 | 0.693434 |
Target: 5'- aCCGUGucgGGcAGCCGCGcGUGcUCGCg -3' miRNA: 3'- cGGCGCua-CCuUCGGCGC-CGCuAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 139383 | 0.71 | 0.693434 |
Target: 5'- cGCCGUGcucuUGGcc-CCGCGGUGGUCGa -3' miRNA: 3'- -CGGCGCu---ACCuucGGCGCCGCUAGCg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 148784 | 0.7 | 0.702936 |
Target: 5'- gGUCGCGccGaGGAGCCGCGGC---UGCg -3' miRNA: 3'- -CGGCGCuaC-CUUCGGCGCCGcuaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 149758 | 0.7 | 0.702936 |
Target: 5'- uGCgGCGAgGGcGGCCGCG-CGGUaCGCc -3' miRNA: 3'- -CGgCGCUaCCuUCGGCGCcGCUA-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 121127 | 0.71 | 0.658903 |
Target: 5'- cGCUGUacUGGggGCCGCGcagcaugagcaugucGCGGUCGa -3' miRNA: 3'- -CGGCGcuACCuuCGGCGC---------------CGCUAGCg -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 191075 | 0.71 | 0.645389 |
Target: 5'- cGCgGCGAccgUGGuGGCgGCGGCGggCuGCg -3' miRNA: 3'- -CGgCGCU---ACCuUCGgCGCCGCuaG-CG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 72983 | 0.71 | 0.645389 |
Target: 5'- aGCCGaCGAgc----CCGCGGCGGUCGUg -3' miRNA: 3'- -CGGC-GCUaccuucGGCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 111193 | 0.72 | 0.606738 |
Target: 5'- cGCCGCGGacGGuGGGCUG-GGCGAUgGCg -3' miRNA: 3'- -CGGCGCUa-CC-UUCGGCgCCGCUAgCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 126568 | 0.72 | 0.606738 |
Target: 5'- gGCCGUGGgcagcgGGAAGCCGCcgucgugccGGUGGUagUGCg -3' miRNA: 3'- -CGGCGCUa-----CCUUCGGCG---------CCGCUA--GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 216647 | 0.72 | 0.606738 |
Target: 5'- cGCCGgGAaagcGAAGacuccgcaucuCCGCGGUGGUCGCg -3' miRNA: 3'- -CGGCgCUac--CUUC-----------GGCGCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 202016 | 0.72 | 0.616391 |
Target: 5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3' miRNA: 3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 86199 | 0.72 | 0.626055 |
Target: 5'- gGCCaCGGUGGAGGCgaaggGCGGCGGcaCGCc -3' miRNA: 3'- -CGGcGCUACCUUCGg----CGCCGCUa-GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 131054 | 0.72 | 0.626055 |
Target: 5'- gGCgGCGGgccucUGGAcgcGGUgGCGGCGAcCGCg -3' miRNA: 3'- -CGgCGCU-----ACCU---UCGgCGCCGCUaGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 219780 | 0.72 | 0.626055 |
Target: 5'- cGCCuuugcgacaGCGGUGGAucucGCCGUGGCGuuaccCGCc -3' miRNA: 3'- -CGG---------CGCUACCUu---CGGCGCCGCua---GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 187583 | 0.72 | 0.626055 |
Target: 5'- uCCGCGG-GGGcuUCGcCGGCGGUCGCu -3' miRNA: 3'- cGGCGCUaCCUucGGC-GCCGCUAGCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 101118 | 0.72 | 0.635723 |
Target: 5'- cCCGCGAgGGggGCgGguCGGCGGgcaCGCg -3' miRNA: 3'- cGGCGCUaCCuuCGgC--GCCGCUa--GCG- -5' |
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14189 | 3' | -58.5 | NC_003521.1 | + | 196884 | 0.7 | 0.702936 |
Target: 5'- aCCGCGGguGAGGCCGgGGCgGAagGCg -3' miRNA: 3'- cGGCGCUacCUUCGGCgCCG-CUagCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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