miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 112073 0.7 0.720836
Target:  5'- cGCCGCGGUGGGgaucaggGGCgGCuGGCGGg--- -3'
miRNA:   3'- -CGGCGCUACCU-------UCGgCG-CCGCUagcg -5'
14189 3' -58.5 NC_003521.1 + 40875 0.7 0.721772
Target:  5'- aGCCGCGGagGGAAGggaCCGgGGCGGggGUc -3'
miRNA:   3'- -CGGCGCUa-CCUUC---GGCgCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 141347 0.7 0.721772
Target:  5'- uCUGCGGUucccacGGguGCgGCGGCGGUCGg -3'
miRNA:   3'- cGGCGCUA------CCuuCGgCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 164427 0.7 0.728303
Target:  5'- cGCCGCuGGUGcuagcagcgccaccGcGGCCGCGGCcgucacGGUCGCc -3'
miRNA:   3'- -CGGCG-CUAC--------------CuUCGGCGCCG------CUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 91993 0.7 0.731091
Target:  5'- cGgCGCGAacGGAGCgggaGCGGCGAggCGCg -3'
miRNA:   3'- -CgGCGCUacCUUCGg---CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 103380 0.71 0.693434
Target:  5'- aCCGUGucgGGcAGCCGCGcGUGcUCGCg -3'
miRNA:   3'- cGGCGCua-CCuUCGGCGC-CGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 89958 0.71 0.692481
Target:  5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3'
miRNA:   3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 86199 0.72 0.626055
Target:  5'- gGCCaCGGUGGAGGCgaaggGCGGCGGcaCGCc -3'
miRNA:   3'- -CGGcGCUACCUUCGg----CGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 131054 0.72 0.626055
Target:  5'- gGCgGCGGgccucUGGAcgcGGUgGCGGCGAcCGCg -3'
miRNA:   3'- -CGgCGCU-----ACCU---UCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 219780 0.72 0.626055
Target:  5'- cGCCuuugcgacaGCGGUGGAucucGCCGUGGCGuuaccCGCc -3'
miRNA:   3'- -CGG---------CGCUACCUu---CGGCGCCGCua---GCG- -5'
14189 3' -58.5 NC_003521.1 + 187583 0.72 0.626055
Target:  5'- uCCGCGG-GGGcuUCGcCGGCGGUCGCu -3'
miRNA:   3'- cGGCGCUaCCUucGGC-GCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 101118 0.72 0.635723
Target:  5'- cCCGCGAgGGggGCgGguCGGCGGgcaCGCg -3'
miRNA:   3'- cGGCGCUaCCuuCGgC--GCCGCUa--GCG- -5'
14189 3' -58.5 NC_003521.1 + 72983 0.71 0.645389
Target:  5'- aGCCGaCGAgc----CCGCGGCGGUCGUg -3'
miRNA:   3'- -CGGC-GCUaccuucGGCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 191075 0.71 0.645389
Target:  5'- cGCgGCGAccgUGGuGGCgGCGGCGggCuGCg -3'
miRNA:   3'- -CGgCGCU---ACCuUCGgCGCCGCuaG-CG- -5'
14189 3' -58.5 NC_003521.1 + 121127 0.71 0.658903
Target:  5'- cGCUGUacUGGggGCCGCGcagcaugagcaugucGCGGUCGa -3'
miRNA:   3'- -CGGCGcuACCuuCGGCGC---------------CGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 125206 0.71 0.664684
Target:  5'- gGCCGCcAUGGuGGCgGCGGCaa-CGCg -3'
miRNA:   3'- -CGGCGcUACCuUCGgCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 114955 0.71 0.664684
Target:  5'- cGCaGCGgcGGcuGCUGCGGCGucaGUCGCc -3'
miRNA:   3'- -CGgCGCuaCCuuCGGCGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 163961 0.71 0.664684
Target:  5'- gGCCGC---GGAcGCCGaagauGGCGGUCGCc -3'
miRNA:   3'- -CGGCGcuaCCUuCGGCg----CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 132576 0.71 0.674301
Target:  5'- gGUCGacaccagaagaUGAUGGAAGCgGCGGCG-UCGg -3'
miRNA:   3'- -CGGC-----------GCUACCUUCGgCGCCGCuAGCg -5'
14189 3' -58.5 NC_003521.1 + 196727 0.71 0.683887
Target:  5'- gGCgGCGAcGGuGGUgGCGGCGG-CGCc -3'
miRNA:   3'- -CGgCGCUaCCuUCGgCGCCGCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.