miRNA display CGI


Results 121 - 140 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 101801 0.69 0.767524
Target:  5'- gGgCGCGcacGAAGCCcagGgGGCGGUCGCg -3'
miRNA:   3'- -CgGCGCuacCUUCGG---CgCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 31720 0.69 0.767524
Target:  5'- uGCgCGUGcUGGGAcGCCGCGGCcacCGCc -3'
miRNA:   3'- -CG-GCGCuACCUU-CGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 119450 0.7 0.716147
Target:  5'- cUCGCGAUGGAggcgcgacagugugaAGCCGCG-CGGggcgUGCa -3'
miRNA:   3'- cGGCGCUACCU---------------UCGGCGCcGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 226364 0.7 0.712384
Target:  5'- cGCCGC---GGGAGCgGCGGCuGA-CGCc -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCG-CUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 73138 0.7 0.712384
Target:  5'- aCgGCGggGGcAGCgGCGGCGG-CGCc -3'
miRNA:   3'- cGgCGCuaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 191075 0.71 0.645389
Target:  5'- cGCgGCGAccgUGGuGGCgGCGGCGggCuGCg -3'
miRNA:   3'- -CGgCGCU---ACCuUCGgCGCCGCuaG-CG- -5'
14189 3' -58.5 NC_003521.1 + 121127 0.71 0.658903
Target:  5'- cGCUGUacUGGggGCCGCGcagcaugagcaugucGCGGUCGa -3'
miRNA:   3'- -CGGCGcuACCuuCGGCGC---------------CGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 125206 0.71 0.664684
Target:  5'- gGCCGCcAUGGuGGCgGCGGCaa-CGCg -3'
miRNA:   3'- -CGGCGcUACCuUCGgCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 114955 0.71 0.664684
Target:  5'- cGCaGCGgcGGcuGCUGCGGCGucaGUCGCc -3'
miRNA:   3'- -CGgCGCuaCCuuCGGCGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 163961 0.71 0.664684
Target:  5'- gGCCGC---GGAcGCCGaagauGGCGGUCGCc -3'
miRNA:   3'- -CGGCGcuaCCUuCGGCg----CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 132576 0.71 0.674301
Target:  5'- gGUCGacaccagaagaUGAUGGAAGCgGCGGCG-UCGg -3'
miRNA:   3'- -CGGC-----------GCUACCUUCGgCGCCGCuAGCg -5'
14189 3' -58.5 NC_003521.1 + 196727 0.71 0.683887
Target:  5'- gGCgGCGAcGGuGGUgGCGGCGG-CGCc -3'
miRNA:   3'- -CGgCGCUaCCuUCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 192824 0.69 0.767524
Target:  5'- aGCCGCa---GAAGCC-CGGCGG-CGCg -3'
miRNA:   3'- -CGGCGcuacCUUCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 89958 0.71 0.692481
Target:  5'- aGCCGCGucucUGGcGGCCGUucgggguucaaccGGCGGguggCGCu -3'
miRNA:   3'- -CGGCGCu---ACCuUCGGCG-------------CCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 103380 0.71 0.693434
Target:  5'- aCCGUGucgGGcAGCCGCGcGUGcUCGCg -3'
miRNA:   3'- cGGCGCua-CCuUCGGCGC-CGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 139383 0.71 0.693434
Target:  5'- cGCCGUGcucuUGGcc-CCGCGGUGGUCGa -3'
miRNA:   3'- -CGGCGCu---ACCuucGGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 148784 0.7 0.702936
Target:  5'- gGUCGCGccGaGGAGCCGCGGC---UGCg -3'
miRNA:   3'- -CGGCGCuaC-CUUCGGCGCCGcuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 149758 0.7 0.702936
Target:  5'- uGCgGCGAgGGcGGCCGCG-CGGUaCGCc -3'
miRNA:   3'- -CGgCGCUaCCuUCGGCGCcGCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 196884 0.7 0.702936
Target:  5'- aCCGCGGguGAGGCCGgGGCgGAagGCg -3'
miRNA:   3'- cGGCGCUacCUUCGGCgCCG-CUagCG- -5'
14189 3' -58.5 NC_003521.1 + 72854 0.7 0.712384
Target:  5'- gGCgGCGAcGGuAGGCa-CGGCGGUCGUc -3'
miRNA:   3'- -CGgCGCUaCC-UUCGgcGCCGCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.