miRNA display CGI


Results 101 - 120 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 113796 0.69 0.793747
Target:  5'- -gCGCGAcGGGcaCCGCGGCGGcgUCGUc -3'
miRNA:   3'- cgGCGCUaCCUucGGCGCCGCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 118000 0.69 0.802239
Target:  5'- -aCGaCGAcGGuAGCgGCGGCGuGUCGCu -3'
miRNA:   3'- cgGC-GCUaCCuUCGgCGCCGC-UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 37438 0.68 0.810592
Target:  5'- gGCCGgGAccUGaGgcGaCCGCGGCGGUuucUGCg -3'
miRNA:   3'- -CGGCgCU--AC-CuuC-GGCGCCGCUA---GCG- -5'
14189 3' -58.5 NC_003521.1 + 94140 0.68 0.818801
Target:  5'- aCCGUGcucaGGGAGCUGCGGuCGGcuUCGUu -3'
miRNA:   3'- cGGCGCua--CCUUCGGCGCC-GCU--AGCG- -5'
14189 3' -58.5 NC_003521.1 + 102360 0.68 0.826859
Target:  5'- gGUgGCaGAUGuGgcGCCGcCGGCGAUgcaCGCg -3'
miRNA:   3'- -CGgCG-CUAC-CuuCGGC-GCCGCUA---GCG- -5'
14189 3' -58.5 NC_003521.1 + 36426 0.71 0.674301
Target:  5'- uUCGCGGUcGGAgGGCCGCGGagaCGAguugCGCu -3'
miRNA:   3'- cGGCGCUA-CCU-UCGGCGCC---GCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 140550 0.71 0.664684
Target:  5'- --gGCGGUGGcuGCUGCGGCGGcgGCg -3'
miRNA:   3'- cggCGCUACCuuCGGCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 186927 0.8 0.25445
Target:  5'- cGCCgGUGgcGGggGCgGCGGCGAaCGCa -3'
miRNA:   3'- -CGG-CGCuaCCuuCGgCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 77706 0.79 0.266172
Target:  5'- uGCC-CGA-GGAGGCgGCGGUGGUCGUg -3'
miRNA:   3'- -CGGcGCUaCCUUCGgCGCCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 166640 0.77 0.368103
Target:  5'- gGCCGCGcgccGGgcGCCGCGGCGca-GCg -3'
miRNA:   3'- -CGGCGCua--CCuuCGGCGCCGCuagCG- -5'
14189 3' -58.5 NC_003521.1 + 76542 0.76 0.415753
Target:  5'- uGCUGCGGUGGcuGUCcaggaGCGGCGGUcCGCg -3'
miRNA:   3'- -CGGCGCUACCuuCGG-----CGCCGCUA-GCG- -5'
14189 3' -58.5 NC_003521.1 + 198840 0.75 0.440951
Target:  5'- uGCUGCGAccuuaaGAAGgCGCGGCGGUCGa -3'
miRNA:   3'- -CGGCGCUac----CUUCgGCGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 161107 0.75 0.470527
Target:  5'- gGCgGCGGUGGuuuagucgggaAuugcaggaucaacgcGGCCGCgGGCGGUCGCg -3'
miRNA:   3'- -CGgCGCUACC-----------U---------------UCGGCG-CCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 7961 0.74 0.512071
Target:  5'- cGCCGCGGUgucgcggccgGGAGGguCCGCGGCGG-CGg -3'
miRNA:   3'- -CGGCGCUA----------CCUUC--GGCGCCGCUaGCg -5'
14189 3' -58.5 NC_003521.1 + 77024 0.74 0.530606
Target:  5'- aGCaUGCGGUuGAGGCCgGCGGUGGUgGCg -3'
miRNA:   3'- -CG-GCGCUAcCUUCGG-CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 126423 0.73 0.577904
Target:  5'- -gCGCGAUGGcGGCCa-GGCGGUCGa -3'
miRNA:   3'- cgGCGCUACCuUCGGcgCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 234436 0.73 0.577904
Target:  5'- cGCCGCGGU---AGCUGCGGCGccccucCGCg -3'
miRNA:   3'- -CGGCGCUAccuUCGGCGCCGCua----GCG- -5'
14189 3' -58.5 NC_003521.1 + 1789 0.72 0.616391
Target:  5'- cGCCGCGAccagguccGGggGUC-CGGCGAaUGCa -3'
miRNA:   3'- -CGGCGCUa-------CCuuCGGcGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 123357 0.72 0.626055
Target:  5'- cGCCGgGuGUGGAGGagGCGGCGGggGCu -3'
miRNA:   3'- -CGGCgC-UACCUUCggCGCCGCUagCG- -5'
14189 3' -58.5 NC_003521.1 + 37514 0.71 0.658903
Target:  5'- cCCGCGGacaucagcgacguccUGGggGUgggcaGCGGgGGUCGCg -3'
miRNA:   3'- cGGCGCU---------------ACCuuCGg----CGCCgCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.