Results 1 - 9 of 9 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14189 | 5' | -53.5 | NC_003521.1 | + | 167030 | 0.66 | 0.990447 |
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Target: 5'- -cGGcGA-CGAUGAcggCCAGUCCGUg -3' miRNA: 3'- gaCC-CUaGCUACUagaGGUCAGGCAg -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 175835 | 0.67 | 0.978503 |
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Target: 5'- -gGGGAUCG-UGAUCUgCCugAGUCUGg- -3' miRNA: 3'- gaCCCUAGCuACUAGA-GG--UCAGGCag -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 125679 | 0.67 | 0.978503 |
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Target: 5'- uUGGaGUUGAUGAUCUC--GUCCGUg -3' miRNA: 3'- gACCcUAGCUACUAGAGguCAGGCAg -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 100846 | 0.68 | 0.967985 |
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Target: 5'- --aGGGUCGGUGAgaggCUCCGG-CCGg- -3' miRNA: 3'- gacCCUAGCUACUa---GAGGUCaGGCag -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 71612 | 0.69 | 0.937 |
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Target: 5'- uCUGGGAUUGuUG-UCUCC--UCCGUCc -3' miRNA: 3'- -GACCCUAGCuACuAGAGGucAGGCAG- -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 223522 | 0.7 | 0.916078 |
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Target: 5'- gCUGGGGaUGAUG-UCUCC-GUCgCGUCa -3' miRNA: 3'- -GACCCUaGCUACuAGAGGuCAG-GCAG- -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 186700 | 0.7 | 0.91027 |
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Target: 5'- -cGGcAUCGAUGuuaAUCUCCGuUCCGUCa -3' miRNA: 3'- gaCCcUAGCUAC---UAGAGGUcAGGCAG- -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 95425 | 0.79 | 0.514627 |
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Target: 5'- gUGGGGUCGAUGAgcaggC-CCAGgCCGUCg -3' miRNA: 3'- gACCCUAGCUACUa----GaGGUCaGGCAG- -5' |
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| 14189 | 5' | -53.5 | NC_003521.1 | + | 75834 | 0.95 | 0.062909 |
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Target: 5'- gCUGGGAUCGAUGA-UUCCAGUCCGUCc -3' miRNA: 3'- -GACCCUAGCUACUaGAGGUCAGGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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