Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 34732 | 0.66 | 0.825 |
|
Target: 5'- gAUGgagGGCggggGAGUCGggGCgAACUACUCGa -3' miRNA: 3'- -UAUa--CCGa---CUCGGCa-UG-UUGGUGAGC- -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 42159 | 0.67 | 0.758433 |
|
Target: 5'- -cAUGGCUuccuuucagaacggcGGGCCGUACA---GCUCGa -3' miRNA: 3'- uaUACCGA---------------CUCGGCAUGUuggUGAGC- -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 4826 | 0.68 | 0.710485 |
|
Target: 5'- ---cGGUUGAGCCGUAacgguuucCGACCcAgUCGg -3' miRNA: 3'- uauaCCGACUCGGCAU--------GUUGG-UgAGC- -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 33930 | 0.68 | 0.688097 |
|
Target: 5'- -cGUGG--GAGCCGUGCAACC--UCGg -3' miRNA: 3'- uaUACCgaCUCGGCAUGUUGGugAGC- -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 14650 | 0.68 | 0.688097 |
|
Target: 5'- ---aGGCguugGGGCCGUaguacagacccaGCGACUGCUCa -3' miRNA: 3'- uauaCCGa---CUCGGCA------------UGUUGGUGAGc -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 48367 | 0.69 | 0.665478 |
|
Target: 5'- gGUGUGGUUcGGCCGgcCGGCCGCg-- -3' miRNA: 3'- -UAUACCGAcUCGGCauGUUGGUGagc -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 22459 | 0.69 | 0.608546 |
|
Target: 5'- ---aGGCUGcGGUC-UGCAGCCACUCc -3' miRNA: 3'- uauaCCGAC-UCGGcAUGUUGGUGAGc -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 1834 | 0.7 | 0.585851 |
|
Target: 5'- ---cGGCgugGGGCUGUGggcCAGCCugUCGa -3' miRNA: 3'- uauaCCGa--CUCGGCAU---GUUGGugAGC- -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 51193 | 0.74 | 0.342331 |
|
Target: 5'- cUAUGGCUGAGCCGUAgAACgugGCUa- -3' miRNA: 3'- uAUACCGACUCGGCAUgUUGg--UGAgc -5' |
|||||||
| 1419 | 3' | -52.6 | NC_001335.1 | + | 49137 | 1.08 | 0.001738 |
|
Target: 5'- aAUAUGGCUGAGCCGUACAACCACUCGg -3' miRNA: 3'- -UAUACCGACUCGGCAUGUUGGUGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home