miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1419 5' -58.8 NC_001335.1 + 23803 0.65 0.556019
Target:  5'- aCGCGGGGuacacaucCCGuUGUCGACCaagacgaucaccgGGCUCGUc -3'
miRNA:   3'- -GUGCUCCu-------GGC-GUAGCUGG-------------CCGAGCA- -5'
1419 5' -58.8 NC_001335.1 + 43250 0.66 0.545542
Target:  5'- cCACGAcGACCGCGUCGAugaacccUCGGacgCGg -3'
miRNA:   3'- -GUGCUcCUGGCGUAGCU-------GGCCga-GCa -5'
1419 5' -58.8 NC_001335.1 + 21998 0.66 0.536168
Target:  5'- uCACGAuGGAgaaCGCucUCGGCCuGCUCGa -3'
miRNA:   3'- -GUGCU-CCUg--GCGu-AGCUGGcCGAGCa -5'
1419 5' -58.8 NC_001335.1 + 40115 0.66 0.536168
Target:  5'- uGCGGGGAuccgggcucuCCGgGUCGAUCcGCUUGUg -3'
miRNA:   3'- gUGCUCCU----------GGCgUAGCUGGcCGAGCA- -5'
1419 5' -58.8 NC_001335.1 + 46500 0.66 0.536168
Target:  5'- -cCGAGGagaacaagGCCGUggaAUCGGCCGGCgggggagCGUu -3'
miRNA:   3'- guGCUCC--------UGGCG---UAGCUGGCCGa------GCA- -5'
1419 5' -58.8 NC_001335.1 + 38927 0.66 0.536168
Target:  5'- gGCGAgGGACUGCAUCGAguucuucaaaCgGGCcaUCGa -3'
miRNA:   3'- gUGCU-CCUGGCGUAGCU----------GgCCG--AGCa -5'
1419 5' -58.8 NC_001335.1 + 19103 0.67 0.485241
Target:  5'- gGCGAGaACUGCGUcaucgacacCGACCGGCgCGa -3'
miRNA:   3'- gUGCUCcUGGCGUA---------GCUGGCCGaGCa -5'
1419 5' -58.8 NC_001335.1 + 2947 0.67 0.475327
Target:  5'- gGCGAgucGGGCCaucuGCcaGUCGGUCGGCUCGUa -3'
miRNA:   3'- gUGCU---CCUGG----CG--UAGCUGGCCGAGCA- -5'
1419 5' -58.8 NC_001335.1 + 7858 0.67 0.446216
Target:  5'- aACGAcuGGACCGCGcUCG-UCGGCUgcCGUg -3'
miRNA:   3'- gUGCU--CCUGGCGU-AGCuGGCCGA--GCA- -5'
1419 5' -58.8 NC_001335.1 + 6928 0.68 0.39114
Target:  5'- cCGCGAGGG-CGUgAUCcGCCGGCUCa- -3'
miRNA:   3'- -GUGCUCCUgGCG-UAGcUGGCCGAGca -5'
1419 5' -58.8 NC_001335.1 + 12037 0.69 0.377219
Target:  5'- aGCGGGcGACCGCucuuGUCcuucgcgccguugagGAUCGGCUCGg -3'
miRNA:   3'- gUGCUC-CUGGCG----UAG---------------CUGGCCGAGCa -5'
1419 5' -58.8 NC_001335.1 + 2312 0.69 0.356972
Target:  5'- cCGCGAGGuCgGCAaggagugagcUgGGCCGGCUCa- -3'
miRNA:   3'- -GUGCUCCuGgCGU----------AgCUGGCCGAGca -5'
1419 5' -58.8 NC_001335.1 + 48377 0.7 0.332755
Target:  5'- cCACGccaaGGGugUGguUCGGCCGGC-CGg -3'
miRNA:   3'- -GUGC----UCCugGCguAGCUGGCCGaGCa -5'
1419 5' -58.8 NC_001335.1 + 9185 0.7 0.331969
Target:  5'- aCAUGAGGaugcgcgccGCCGCGucggucaUCGACCGaaGCUCGg -3'
miRNA:   3'- -GUGCUCC---------UGGCGU-------AGCUGGC--CGAGCa -5'
1419 5' -58.8 NC_001335.1 + 19055 0.7 0.324955
Target:  5'- gAUGAGGAguuCCGCAaCcGCCGGCUCa- -3'
miRNA:   3'- gUGCUCCU---GGCGUaGcUGGCCGAGca -5'
1419 5' -58.8 NC_001335.1 + 2788 0.7 0.317292
Target:  5'- cCACGAcGGCCGCA-CGcACCaGCUCGUc -3'
miRNA:   3'- -GUGCUcCUGGCGUaGC-UGGcCGAGCA- -5'
1419 5' -58.8 NC_001335.1 + 15450 0.74 0.182104
Target:  5'- uGCGAGGAUCGCcccgccgaacuuGUCGAUCaGCUCGg -3'
miRNA:   3'- gUGCUCCUGGCG------------UAGCUGGcCGAGCa -5'
1419 5' -58.8 NC_001335.1 + 49099 1.06 0.000768
Target:  5'- cCACGAGGACCGCAUCGACCGGCUCGUc -3'
miRNA:   3'- -GUGCUCCUGGCGUAGCUGGCCGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.