miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 119747 0.65 0.945496
Target:  5'- cCGCguaUGCGGCagcuggaguACCAGCAcaccugggaccggcGCAGCgGCg -3'
miRNA:   3'- aGCG---AUGCCG---------UGGUCGU--------------UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 91198 0.65 0.945496
Target:  5'- cUCGCcgGCGGCGuCCAGCGccguuucgcgcaugAgGGCgUGCa -3'
miRNA:   3'- -AGCGa-UGCCGU-GGUCGU--------------UgUCG-ACGa -5'
14195 3' -56.4 NC_003521.1 + 74776 0.66 0.937792
Target:  5'- -gGCUggaguaugacgACGGCGgCAGCggUAGCgGCg -3'
miRNA:   3'- agCGA-----------UGCCGUgGUCGuuGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 121470 0.66 0.922575
Target:  5'- cUCGU--CGGagcCCAGCGACAGgUGCa -3'
miRNA:   3'- -AGCGauGCCgu-GGUCGUUGUCgACGa -5'
14195 3' -56.4 NC_003521.1 + 221911 0.66 0.934427
Target:  5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3'
miRNA:   3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 42774 0.66 0.922575
Target:  5'- cUGCUGCucaaGCACCuGCccgugcagcccGGCGGCUGCa -3'
miRNA:   3'- aGCGAUGc---CGUGGuCG-----------UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 59614 0.66 0.932951
Target:  5'- -gGCgGCGGCcCCGGCGgcgaccGCGGCUcGCa -3'
miRNA:   3'- agCGaUGCCGuGGUCGU------UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 239377 0.66 0.932951
Target:  5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 197447 0.66 0.922575
Target:  5'- -gGCcagGCGGCGCCAGC-GCAuGCUcugGCg -3'
miRNA:   3'- agCGa--UGCCGUGGUCGuUGU-CGA---CGa -5'
14195 3' -56.4 NC_003521.1 + 54293 0.66 0.927878
Target:  5'- cCGUUGCGGCugGCCAcGUAgaGCAGC-GCg -3'
miRNA:   3'- aGCGAUGCCG--UGGU-CGU--UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 99451 0.66 0.927878
Target:  5'- gCGgUAgGGCGCCAGaCAGC-GCUGg- -3'
miRNA:   3'- aGCgAUgCCGUGGUC-GUUGuCGACga -5'
14195 3' -56.4 NC_003521.1 + 116346 0.66 0.927878
Target:  5'- gCGCUACG--ACCAGCcGCccgacgaggccgAGCUGCUg -3'
miRNA:   3'- aGCGAUGCcgUGGUCGuUG------------UCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 195554 0.66 0.932951
Target:  5'- -aGC-ACGGUGCCAGUGGCAGUaccaGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 110099 0.66 0.927878
Target:  5'- gCGCUGCGGUcaaGCgGGCucuGACAGC-GCc -3'
miRNA:   3'- aGCGAUGCCG---UGgUCG---UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 101504 0.66 0.937792
Target:  5'- -aGCgGCGGCcagacgcggccgACCAGCAGgcGCUGCa -3'
miRNA:   3'- agCGaUGCCG------------UGGUCGUUguCGACGa -5'
14195 3' -56.4 NC_003521.1 + 30324 0.66 0.937792
Target:  5'- gCGCUccagcaACuGCGCCAGCGAguCGGCgGCg -3'
miRNA:   3'- aGCGA------UGcCGUGGUCGUU--GUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 119592 0.66 0.932951
Target:  5'- aCGCUG-GGCGgCGGguGCAGCgucucgUGCUg -3'
miRNA:   3'- aGCGAUgCCGUgGUCguUGUCG------ACGA- -5'
14195 3' -56.4 NC_003521.1 + 46981 0.66 0.932951
Target:  5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3'
miRNA:   3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5'
14195 3' -56.4 NC_003521.1 + 34452 0.66 0.937318
Target:  5'- gCGCUGCGGgccugggggucguCGCCgcaGGcCAGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGCC-------------GUGG---UC-GUUGUCGA-CGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.