Results 1 - 20 of 357 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 3' | -56.4 | NC_003521.1 | + | 119747 | 0.65 | 0.945496 |
Target: 5'- cCGCguaUGCGGCagcuggaguACCAGCAcaccugggaccggcGCAGCgGCg -3' miRNA: 3'- aGCG---AUGCCG---------UGGUCGU--------------UGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 91198 | 0.65 | 0.945496 |
Target: 5'- cUCGCcgGCGGCGuCCAGCGccguuucgcgcaugAgGGCgUGCa -3' miRNA: 3'- -AGCGa-UGCCGU-GGUCGU--------------UgUCG-ACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 74776 | 0.66 | 0.937792 |
Target: 5'- -gGCUggaguaugacgACGGCGgCAGCggUAGCgGCg -3' miRNA: 3'- agCGA-----------UGCCGUgGUCGuuGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 36286 | 0.66 | 0.937792 |
Target: 5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3' miRNA: 3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 121470 | 0.66 | 0.922575 |
Target: 5'- cUCGU--CGGagcCCAGCGACAGgUGCa -3' miRNA: 3'- -AGCGauGCCgu-GGUCGUUGUCgACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 221911 | 0.66 | 0.934427 |
Target: 5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3' miRNA: 3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 42774 | 0.66 | 0.922575 |
Target: 5'- cUGCUGCucaaGCACCuGCccgugcagcccGGCGGCUGCa -3' miRNA: 3'- aGCGAUGc---CGUGGuCG-----------UUGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 59614 | 0.66 | 0.932951 |
Target: 5'- -gGCgGCGGCcCCGGCGgcgaccGCGGCUcGCa -3' miRNA: 3'- agCGaUGCCGuGGUCGU------UGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 239377 | 0.66 | 0.932951 |
Target: 5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3' miRNA: 3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 197447 | 0.66 | 0.922575 |
Target: 5'- -gGCcagGCGGCGCCAGC-GCAuGCUcugGCg -3' miRNA: 3'- agCGa--UGCCGUGGUCGuUGU-CGA---CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 54293 | 0.66 | 0.927878 |
Target: 5'- cCGUUGCGGCugGCCAcGUAgaGCAGC-GCg -3' miRNA: 3'- aGCGAUGCCG--UGGU-CGU--UGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 99451 | 0.66 | 0.927878 |
Target: 5'- gCGgUAgGGCGCCAGaCAGC-GCUGg- -3' miRNA: 3'- aGCgAUgCCGUGGUC-GUUGuCGACga -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 116346 | 0.66 | 0.927878 |
Target: 5'- gCGCUACG--ACCAGCcGCccgacgaggccgAGCUGCUg -3' miRNA: 3'- aGCGAUGCcgUGGUCGuUG------------UCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 195554 | 0.66 | 0.932951 |
Target: 5'- -aGC-ACGGUGCCAGUGGCAGUaccaGCa -3' miRNA: 3'- agCGaUGCCGUGGUCGUUGUCGa---CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 110099 | 0.66 | 0.927878 |
Target: 5'- gCGCUGCGGUcaaGCgGGCucuGACAGC-GCc -3' miRNA: 3'- aGCGAUGCCG---UGgUCG---UUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 101504 | 0.66 | 0.937792 |
Target: 5'- -aGCgGCGGCcagacgcggccgACCAGCAGgcGCUGCa -3' miRNA: 3'- agCGaUGCCG------------UGGUCGUUguCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 30324 | 0.66 | 0.937792 |
Target: 5'- gCGCUccagcaACuGCGCCAGCGAguCGGCgGCg -3' miRNA: 3'- aGCGA------UGcCGUGGUCGUU--GUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 119592 | 0.66 | 0.932951 |
Target: 5'- aCGCUG-GGCGgCGGguGCAGCgucucgUGCUg -3' miRNA: 3'- aGCGAUgCCGUgGUCguUGUCG------ACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 46981 | 0.66 | 0.932951 |
Target: 5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3' miRNA: 3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 34452 | 0.66 | 0.937318 |
Target: 5'- gCGCUGCGGgccugggggucguCGCCgcaGGcCAGCAGCUcGCg -3' miRNA: 3'- aGCGAUGCC-------------GUGG---UC-GUUGUCGA-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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