miRNA display CGI


Results 1 - 20 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 74184 1.09 0.003797
Target:  5'- gUCGCUACGGCACCAGCAACAGCUGCUa -3'
miRNA:   3'- -AGCGAUGCCGUGGUCGUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 30969 0.89 0.072295
Target:  5'- gCGCU-CGGCACgCAGCAGCAGCUGCg -3'
miRNA:   3'- aGCGAuGCCGUG-GUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 201537 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 1309 0.88 0.086647
Target:  5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3'
miRNA:   3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 179957 0.86 0.112615
Target:  5'- --aCUGCGGCACCAGCAcCAGCUGCg -3'
miRNA:   3'- agcGAUGCCGUGGUCGUuGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 170151 0.81 0.243458
Target:  5'- aCGCcguCGGUuuuCCAGCAGCAGCUGCa -3'
miRNA:   3'- aGCGau-GCCGu--GGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 163329 0.81 0.243458
Target:  5'- gCGCgaGCGGCACUAGCGGCGGUUGUa -3'
miRNA:   3'- aGCGa-UGCCGUGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 198022 0.8 0.267478
Target:  5'- cCGUUGCGGCGCguGCAGCcgccgGGCUGCa -3'
miRNA:   3'- aGCGAUGCCGUGguCGUUG-----UCGACGa -5'
14195 3' -56.4 NC_003521.1 + 205331 0.8 0.267478
Target:  5'- aCcCUACGGCGCCuccucggcGGCGGCAGCUGCg -3'
miRNA:   3'- aGcGAUGCCGUGG--------UCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 47637 0.78 0.335819
Target:  5'- cCGUgacgGCGGCuCUGGCGGCAGCUGCg -3'
miRNA:   3'- aGCGa---UGCCGuGGUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 61424 0.78 0.343315
Target:  5'- -aGCaUGCGGCACCugAGCgAGCGGCUGCa -3'
miRNA:   3'- agCG-AUGCCGUGG--UCG-UUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 129988 0.78 0.366517
Target:  5'- gUCGCUGCcgcuGCGCCGGCGGCGGC-GCg -3'
miRNA:   3'- -AGCGAUGc---CGUGGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 70653 0.78 0.366517
Target:  5'- aCGCUGCGGCugguGCuGCAGCUGCUg -3'
miRNA:   3'- aGCGAUGCCGugguCGuUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 118727 0.77 0.374487
Target:  5'- -gGC-GCGGCACCGGCAcgGGCUGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 118266 0.77 0.374487
Target:  5'- aCGCgguagcCGGCACCAGCGGCGGUaGCa -3'
miRNA:   3'- aGCGau----GCCGUGGUCGUUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 8465 0.77 0.390776
Target:  5'- cCGCUucGCGGUGCCGccGCGACuGCUGCUa -3'
miRNA:   3'- aGCGA--UGCCGUGGU--CGUUGuCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 129545 0.76 0.413487
Target:  5'- aUCGCgGCGGCGCUGGCAcggcgggcccgacgAUGGCUGCUc -3'
miRNA:   3'- -AGCGaUGCCGUGGUCGU--------------UGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 117960 0.76 0.416061
Target:  5'- aUCGCgGCGGCgGCCAGCAcCAGC-GCUa -3'
miRNA:   3'- -AGCGaUGCCG-UGGUCGUuGUCGaCGA- -5'
14195 3' -56.4 NC_003521.1 + 65582 0.76 0.416061
Target:  5'- aCGCUACcGCcagggaCAGCAACAGCUGCa -3'
miRNA:   3'- aGCGAUGcCGug----GUCGUUGUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 76401 0.76 0.432583
Target:  5'- gCGCUGCuaGCACCAGCGGCGGUgugguggUGCUg -3'
miRNA:   3'- aGCGAUGc-CGUGGUCGUUGUCG-------ACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.