Results 1 - 20 of 357 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 3' | -56.4 | NC_003521.1 | + | 200082 | 0.74 | 0.535931 |
Target: 5'- -gGCUugGccuCGCCAGCAcACAGCUGCa -3' miRNA: 3'- agCGAugCc--GUGGUCGU-UGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 84674 | 0.76 | 0.451281 |
Target: 5'- gUCGCaGCaGCGCCAGCAGCuGCgUGCa -3' miRNA: 3'- -AGCGaUGcCGUGGUCGUUGuCG-ACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 186842 | 0.76 | 0.451281 |
Target: 5'- cUGCgaaugGCGGC-CCAGCGGCGGCgUGCa -3' miRNA: 3'- aGCGa----UGCCGuGGUCGUUGUCG-ACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 29126 | 0.76 | 0.460339 |
Target: 5'- gCGCUGCGcuGCuacauCCAGCAcCAGCUGCa -3' miRNA: 3'- aGCGAUGC--CGu----GGUCGUuGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 219463 | 0.76 | 0.460339 |
Target: 5'- -aGCUGCGGCACgAGCGACcauAGCaGCg -3' miRNA: 3'- agCGAUGCCGUGgUCGUUG---UCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 196652 | 0.76 | 0.460339 |
Target: 5'- cUCGCggaguaccgACGGCGCCAGCu---GCUGCUc -3' miRNA: 3'- -AGCGa--------UGCCGUGGUCGuuguCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 68546 | 0.75 | 0.469493 |
Target: 5'- -gGCaGCGGCcgccaacuAUCAGCAGCAGCUGCc -3' miRNA: 3'- agCGaUGCCG--------UGGUCGUUGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 74698 | 0.75 | 0.488073 |
Target: 5'- -aGCgacgGCGGCGCC-GCGGCAGCgGCUc -3' miRNA: 3'- agCGa---UGCCGUGGuCGUUGUCGaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 168546 | 0.75 | 0.516568 |
Target: 5'- gCGCggcgGCGGCGCUGGCG--GGCUGCg -3' miRNA: 3'- aGCGa---UGCCGUGGUCGUugUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 75534 | 0.76 | 0.442321 |
Target: 5'- -aGCUgugucaguucaGCGGCGCCGGCGGCGGCUacGCc -3' miRNA: 3'- agCGA-----------UGCCGUGGUCGUUGUCGA--CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 17465 | 0.76 | 0.441431 |
Target: 5'- gCGCUcggaggagagacgACGGCACCGGUAGCGGCgccGCc -3' miRNA: 3'- aGCGA-------------UGCCGUGGUCGUUGUCGa--CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 117960 | 0.76 | 0.416061 |
Target: 5'- aUCGCgGCGGCgGCCAGCAcCAGC-GCUa -3' miRNA: 3'- -AGCGaUGCCG-UGGUCGUuGUCGaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 201537 | 0.88 | 0.086647 |
Target: 5'- cCGCUACGGCGCCGGCGacguggcGCGGCUGUa -3' miRNA: 3'- aGCGAUGCCGUGGUCGU-------UGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 61424 | 0.78 | 0.343315 |
Target: 5'- -aGCaUGCGGCACCugAGCgAGCGGCUGCa -3' miRNA: 3'- agCG-AUGCCGUGG--UCG-UUGUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 129988 | 0.78 | 0.366517 |
Target: 5'- gUCGCUGCcgcuGCGCCGGCGGCGGC-GCg -3' miRNA: 3'- -AGCGAUGc---CGUGGUCGUUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 70653 | 0.78 | 0.366517 |
Target: 5'- aCGCUGCGGCugguGCuGCAGCUGCUg -3' miRNA: 3'- aGCGAUGCCGugguCGuUGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 118266 | 0.77 | 0.374487 |
Target: 5'- aCGCgguagcCGGCACCAGCGGCGGUaGCa -3' miRNA: 3'- aGCGau----GCCGUGGUCGUUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 118727 | 0.77 | 0.374487 |
Target: 5'- -gGC-GCGGCACCGGCAcgGGCUGCa -3' miRNA: 3'- agCGaUGCCGUGGUCGUugUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 129545 | 0.76 | 0.413487 |
Target: 5'- aUCGCgGCGGCGCUGGCAcggcgggcccgacgAUGGCUGCUc -3' miRNA: 3'- -AGCGaUGCCGUGGUCGU--------------UGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 65582 | 0.76 | 0.416061 |
Target: 5'- aCGCUACcGCcagggaCAGCAACAGCUGCa -3' miRNA: 3'- aGCGAUGcCGug----GUCGUUGUCGACGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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