Results 21 - 40 of 357 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 3' | -56.4 | NC_003521.1 | + | 192296 | 0.66 | 0.937792 |
Target: 5'- uUCGU--CGGCACCguccgcGGUAGCGGCgucgGCg -3' miRNA: 3'- -AGCGauGCCGUGG------UCGUUGUCGa---CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 36286 | 0.66 | 0.937792 |
Target: 5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3' miRNA: 3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 152355 | 0.66 | 0.937792 |
Target: 5'- aCGCUGCucuGGgGCCGGCcggGGCGGC-GCg -3' miRNA: 3'- aGCGAUG---CCgUGGUCG---UUGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 124022 | 0.66 | 0.937792 |
Target: 5'- gUGCcGCGGUGCgu-CAGCGGCUGCUu -3' miRNA: 3'- aGCGaUGCCGUGgucGUUGUCGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 113796 | 0.66 | 0.937792 |
Target: 5'- gCGCgACgGGCACC-GCGGCGGCgucgucggGCa -3' miRNA: 3'- aGCGaUG-CCGUGGuCGUUGUCGa-------CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 17638 | 0.66 | 0.937792 |
Target: 5'- gCGCUGCGGagcuacguaCGCCAGCAcCGGg-GCa -3' miRNA: 3'- aGCGAUGCC---------GUGGUCGUuGUCgaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 103451 | 0.66 | 0.937792 |
Target: 5'- gUCGCgGCGGUugCGcGCcACGGCguagGCg -3' miRNA: 3'- -AGCGaUGCCGugGU-CGuUGUCGa---CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 34452 | 0.66 | 0.937318 |
Target: 5'- gCGCUGCGGgccugggggucguCGCCgcaGGcCAGCAGCUcGCg -3' miRNA: 3'- aGCGAUGCC-------------GUGG---UC-GUUGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 221911 | 0.66 | 0.934427 |
Target: 5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3' miRNA: 3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 239377 | 0.66 | 0.932951 |
Target: 5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3' miRNA: 3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 59614 | 0.66 | 0.932951 |
Target: 5'- -gGCgGCGGCcCCGGCGgcgaccGCGGCUcGCa -3' miRNA: 3'- agCGaUGCCGuGGUCGU------UGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 195554 | 0.66 | 0.932951 |
Target: 5'- -aGC-ACGGUGCCAGUGGCAGUaccaGCa -3' miRNA: 3'- agCGaUGCCGUGGUCGUUGUCGa---CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 46981 | 0.66 | 0.932951 |
Target: 5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3' miRNA: 3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 98829 | 0.66 | 0.932951 |
Target: 5'- -aGCUGCuuGGCGCgGGCcAGCucccGCUGCa -3' miRNA: 3'- agCGAUG--CCGUGgUCG-UUGu---CGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 168829 | 0.66 | 0.932951 |
Target: 5'- -aGCUG-GGCcCCAGCG--AGCUGCg -3' miRNA: 3'- agCGAUgCCGuGGUCGUugUCGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 186673 | 0.66 | 0.932951 |
Target: 5'- -gGCgGCGGCcucuccaacGCCGGCGguaGCAGCaUGCa -3' miRNA: 3'- agCGaUGCCG---------UGGUCGU---UGUCG-ACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 93914 | 0.66 | 0.932951 |
Target: 5'- -gGCUggucGCGGCAagCGGCGACuaccGCUGCc -3' miRNA: 3'- agCGA----UGCCGUg-GUCGUUGu---CGACGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 39149 | 0.66 | 0.932951 |
Target: 5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3' miRNA: 3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 123752 | 0.66 | 0.932951 |
Target: 5'- uUCGC-ACGGCgugaccGCCGGCuccGCGGCcGCc -3' miRNA: 3'- -AGCGaUGCCG------UGGUCGu--UGUCGaCGa -5' |
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14195 | 3' | -56.4 | NC_003521.1 | + | 76541 | 0.66 | 0.932951 |
Target: 5'- cUGCUGCGGUggcuguCCAGgAGCGGCgguccGCg -3' miRNA: 3'- aGCGAUGCCGu-----GGUCgUUGUCGa----CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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