miRNA display CGI


Results 21 - 40 of 357 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 3' -56.4 NC_003521.1 + 192296 0.66 0.937792
Target:  5'- uUCGU--CGGCACCguccgcGGUAGCGGCgucgGCg -3'
miRNA:   3'- -AGCGauGCCGUGG------UCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 36286 0.66 0.937792
Target:  5'- gCGCUGC-GCACCucggaccGCGACAacuacgggcGCUGCg -3'
miRNA:   3'- aGCGAUGcCGUGGu------CGUUGU---------CGACGa -5'
14195 3' -56.4 NC_003521.1 + 152355 0.66 0.937792
Target:  5'- aCGCUGCucuGGgGCCGGCcggGGCGGC-GCg -3'
miRNA:   3'- aGCGAUG---CCgUGGUCG---UUGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 124022 0.66 0.937792
Target:  5'- gUGCcGCGGUGCgu-CAGCGGCUGCUu -3'
miRNA:   3'- aGCGaUGCCGUGgucGUUGUCGACGA- -5'
14195 3' -56.4 NC_003521.1 + 113796 0.66 0.937792
Target:  5'- gCGCgACgGGCACC-GCGGCGGCgucgucggGCa -3'
miRNA:   3'- aGCGaUG-CCGUGGuCGUUGUCGa-------CGa -5'
14195 3' -56.4 NC_003521.1 + 17638 0.66 0.937792
Target:  5'- gCGCUGCGGagcuacguaCGCCAGCAcCGGg-GCa -3'
miRNA:   3'- aGCGAUGCC---------GUGGUCGUuGUCgaCGa -5'
14195 3' -56.4 NC_003521.1 + 103451 0.66 0.937792
Target:  5'- gUCGCgGCGGUugCGcGCcACGGCguagGCg -3'
miRNA:   3'- -AGCGaUGCCGugGU-CGuUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 34452 0.66 0.937318
Target:  5'- gCGCUGCGGgccugggggucguCGCCgcaGGcCAGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGCC-------------GUGG---UC-GUUGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 221911 0.66 0.934427
Target:  5'- gCGC-GCGGCGCCAcccuucggggcugccGCGGCGccucguccucgucGCUGCUc -3'
miRNA:   3'- aGCGaUGCCGUGGU---------------CGUUGU-------------CGACGA- -5'
14195 3' -56.4 NC_003521.1 + 239377 0.66 0.932951
Target:  5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 59614 0.66 0.932951
Target:  5'- -gGCgGCGGCcCCGGCGgcgaccGCGGCUcGCa -3'
miRNA:   3'- agCGaUGCCGuGGUCGU------UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 195554 0.66 0.932951
Target:  5'- -aGC-ACGGUGCCAGUGGCAGUaccaGCa -3'
miRNA:   3'- agCGaUGCCGUGGUCGUUGUCGa---CGa -5'
14195 3' -56.4 NC_003521.1 + 46981 0.66 0.932951
Target:  5'- gUCGCUGCGGUA-CAGCAugAuGgaGUUc -3'
miRNA:   3'- -AGCGAUGCCGUgGUCGUugU-CgaCGA- -5'
14195 3' -56.4 NC_003521.1 + 98829 0.66 0.932951
Target:  5'- -aGCUGCuuGGCGCgGGCcAGCucccGCUGCa -3'
miRNA:   3'- agCGAUG--CCGUGgUCG-UUGu---CGACGa -5'
14195 3' -56.4 NC_003521.1 + 168829 0.66 0.932951
Target:  5'- -aGCUG-GGCcCCAGCG--AGCUGCg -3'
miRNA:   3'- agCGAUgCCGuGGUCGUugUCGACGa -5'
14195 3' -56.4 NC_003521.1 + 186673 0.66 0.932951
Target:  5'- -gGCgGCGGCcucuccaacGCCGGCGguaGCAGCaUGCa -3'
miRNA:   3'- agCGaUGCCG---------UGGUCGU---UGUCG-ACGa -5'
14195 3' -56.4 NC_003521.1 + 93914 0.66 0.932951
Target:  5'- -gGCUggucGCGGCAagCGGCGACuaccGCUGCc -3'
miRNA:   3'- agCGA----UGCCGUg-GUCGUUGu---CGACGa -5'
14195 3' -56.4 NC_003521.1 + 39149 0.66 0.932951
Target:  5'- gUGCUGC--CACCGGCGgcGCAGCUcGCg -3'
miRNA:   3'- aGCGAUGccGUGGUCGU--UGUCGA-CGa -5'
14195 3' -56.4 NC_003521.1 + 123752 0.66 0.932951
Target:  5'- uUCGC-ACGGCgugaccGCCGGCuccGCGGCcGCc -3'
miRNA:   3'- -AGCGaUGCCG------UGGUCGu--UGUCGaCGa -5'
14195 3' -56.4 NC_003521.1 + 76541 0.66 0.932951
Target:  5'- cUGCUGCGGUggcuguCCAGgAGCGGCgguccGCg -3'
miRNA:   3'- aGCGAUGCCGu-----GGUCgUUGUCGa----CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.