miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 27439 0.66 0.749813
Target:  5'- -aGGCAGCccAGGCCGaauUCGGC--CGUGAg -3'
miRNA:   3'- cgUCGUCG--UCCGGC---AGCCGcgGCACU- -5'
14195 5' -61.6 NC_003521.1 + 186593 0.66 0.785172
Target:  5'- gGUAGCAGCcgcccGGCaGUCGGUacuGCCG-GAc -3'
miRNA:   3'- -CGUCGUCGu----CCGgCAGCCG---CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 127441 0.66 0.792877
Target:  5'- aGCGGCucgucggccAGCuGGCCGUUGuugacgcccgccaGCGCCGaGAu -3'
miRNA:   3'- -CGUCG---------UCGuCCGGCAGC-------------CGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 43841 0.66 0.776495
Target:  5'- cCGGCcGCGGGcCCGUCacaGGCGCCc--- -3'
miRNA:   3'- cGUCGuCGUCC-GGCAG---CCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 131103 0.66 0.758808
Target:  5'- cCGGaCGGCGGGgCGgcgCGGCuGCCGgGAa -3'
miRNA:   3'- cGUC-GUCGUCCgGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 166420 0.66 0.776495
Target:  5'- cGCGGCA-CAGGUCGUCcaCGCaCGUGu -3'
miRNA:   3'- -CGUCGUcGUCCGGCAGccGCG-GCACu -5'
14195 5' -61.6 NC_003521.1 + 53512 0.66 0.767704
Target:  5'- uGCGGCGucGCAgcGGCCGaUGGUGCUGUc- -3'
miRNA:   3'- -CGUCGU--CGU--CCGGCaGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 168650 0.66 0.767704
Target:  5'- aCGGUcaucgaGGCAuGCCGaCGGCGCCG-GAg -3'
miRNA:   3'- cGUCG------UCGUcCGGCaGCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 58811 0.66 0.776495
Target:  5'- aCGGUcucgAGCAGGCagcgcgUGGCGgCCGUGAc -3'
miRNA:   3'- cGUCG----UCGUCCGgca---GCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 239982 0.66 0.793727
Target:  5'- cCAGCAGUcuucgGGGuaGUCGGUGCCu--- -3'
miRNA:   3'- cGUCGUCG-----UCCggCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 226373 0.66 0.785172
Target:  5'- aGCGGCGGCugacGCCGcCGcaGgGCCGUGu -3'
miRNA:   3'- -CGUCGUCGuc--CGGCaGC--CgCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 142302 0.66 0.749813
Target:  5'- uGCAGCGGCccaGCCG-CGcGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGuc-CGGCaGC-CGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 220936 0.66 0.767704
Target:  5'- aCAGCAGCAGGa--UCaGCGCCGa-- -3'
miRNA:   3'- cGUCGUCGUCCggcAGcCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 116787 0.66 0.785172
Target:  5'- cGCGGCAcGCuGGCCGUCuacgGCCGcGAc -3'
miRNA:   3'- -CGUCGU-CGuCCGGCAGccg-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 124877 0.66 0.758808
Target:  5'- gGCGGCAGCAGGCaca-GcGCGUCGc-- -3'
miRNA:   3'- -CGUCGUCGUCCGgcagC-CGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 238742 0.66 0.758808
Target:  5'- cCAGCAGCAGaa-GUCGG-GCCGgcgGAg -3'
miRNA:   3'- cGUCGUCGUCcggCAGCCgCGGCa--CU- -5'
14195 5' -61.6 NC_003521.1 + 132470 0.66 0.776495
Target:  5'- cCGGuCAGCcGucuucggagaccGCCGUCGGCGCggaCGUGAu -3'
miRNA:   3'- cGUC-GUCGuC------------CGGCAGCCGCG---GCACU- -5'
14195 5' -61.6 NC_003521.1 + 232348 0.66 0.767704
Target:  5'- aGCAGUAGCAGcaGUCG-CGGCGgcaCCGcGAa -3'
miRNA:   3'- -CGUCGUCGUC--CGGCaGCCGC---GGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 101501 0.66 0.749813
Target:  5'- aGCAGCGGCGgccagacgcGGCCGaccagcaGGCGCUGc-- -3'
miRNA:   3'- -CGUCGUCGU---------CCGGCag-----CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 126574 0.66 0.749813
Target:  5'- -gGGCAGCGGgaagccGCCGUCG-UGCCgGUGGu -3'
miRNA:   3'- cgUCGUCGUC------CGGCAGCcGCGG-CACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.