Results 1 - 20 of 304 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14195 | 5' | -61.6 | NC_003521.1 | + | 74219 | 1.1 | 0.001343 |
Target: 5'- aGCAGCAGCAGGCCGUCGGCGCCGUGAc -3' miRNA: 3'- -CGUCGUCGUCCGGCAGCCGCGGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 98470 | 0.82 | 0.104492 |
Target: 5'- gGCGGCGGC-GGCCG-CGGCGgCCGUGGc -3' miRNA: 3'- -CGUCGUCGuCCGGCaGCCGC-GGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 176283 | 0.81 | 0.124072 |
Target: 5'- aGCAGCAGCAgacGGgCGUCGGCGUCGUc- -3' miRNA: 3'- -CGUCGUCGU---CCgGCAGCCGCGGCAcu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 222069 | 0.79 | 0.177907 |
Target: 5'- cGCAGCAGCGacCCGUCGGCGCCa--- -3' miRNA: 3'- -CGUCGUCGUccGGCAGCCGCGGcacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 224014 | 0.78 | 0.190911 |
Target: 5'- gGCAGCGGCGGGCCcggcgGUCggggcgGGCGCCGUc- -3' miRNA: 3'- -CGUCGUCGUCCGG-----CAG------CCGCGGCAcu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 70267 | 0.78 | 0.195428 |
Target: 5'- uGCAGCacgGGCAGGCgcagGUCGGCGCCGa-- -3' miRNA: 3'- -CGUCG---UCGUCCGg---CAGCCGCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 211381 | 0.78 | 0.195428 |
Target: 5'- --cGUAGUAGGCCGUCaGGCGCCGg-- -3' miRNA: 3'- cguCGUCGUCCGGCAG-CCGCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 52252 | 0.78 | 0.204742 |
Target: 5'- gGCAGCGGCAGGCgGUUGuuGuuGUGAu -3' miRNA: 3'- -CGUCGUCGUCCGgCAGCcgCggCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 134998 | 0.77 | 0.219433 |
Target: 5'- aGCAGgGGCAGGCCGU-GGCGUCGc-- -3' miRNA: 3'- -CGUCgUCGUCCGGCAgCCGCGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 39417 | 0.76 | 0.239867 |
Target: 5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3' miRNA: 3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 239644 | 0.76 | 0.239867 |
Target: 5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3' miRNA: 3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 57160 | 0.76 | 0.240412 |
Target: 5'- cGC-GCGGCAGGUCGUCGGCguGCCGc-- -3' miRNA: 3'- -CGuCGUCGUCCGGCAGCCG--CGGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 131051 | 0.75 | 0.274985 |
Target: 5'- gGCGGCGGCGGGCCucUGGaCGCgGUGGc -3' miRNA: 3'- -CGUCGUCGUCCGGcaGCC-GCGgCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 123181 | 0.75 | 0.287363 |
Target: 5'- gGCGGCGGCgggggaccguAGGCCGcauaCGGCGCCGgguagGAc -3' miRNA: 3'- -CGUCGUCG----------UCCGGCa---GCCGCGGCa----CU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 76358 | 0.75 | 0.287363 |
Target: 5'- uGCGGCGGC-GGCag-CGGCGaCCGUGAc -3' miRNA: 3'- -CGUCGUCGuCCGgcaGCCGC-GGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 122515 | 0.75 | 0.293714 |
Target: 5'- cGCGGCGGCGGGCagGcCGGCgGCgGUGGu -3' miRNA: 3'- -CGUCGUCGUCCGg-CaGCCG-CGgCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 104260 | 0.75 | 0.300175 |
Target: 5'- uGCAGCGGCAGcuGCCaGUCGGCGgCGa-- -3' miRNA: 3'- -CGUCGUCGUC--CGG-CAGCCGCgGCacu -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 198210 | 0.75 | 0.306745 |
Target: 5'- gGCGGCGaCGGcGCCGcCGGCGgCCGUGGu -3' miRNA: 3'- -CGUCGUcGUC-CGGCaGCCGC-GGCACU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 57283 | 0.75 | 0.306745 |
Target: 5'- cCAGCAGCAGGUCGgugcgCGGCGaCUGgugGAu -3' miRNA: 3'- cGUCGUCGUCCGGCa----GCCGC-GGCa--CU- -5' |
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14195 | 5' | -61.6 | NC_003521.1 | + | 192311 | 0.75 | 0.313424 |
Target: 5'- cGCGGUAGCGGcGUCGgCGGCaCCGUGGg -3' miRNA: 3'- -CGUCGUCGUC-CGGCaGCCGcGGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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