miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 74219 1.1 0.001343
Target:  5'- aGCAGCAGCAGGCCGUCGGCGCCGUGAc -3'
miRNA:   3'- -CGUCGUCGUCCGGCAGCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 98470 0.82 0.104492
Target:  5'- gGCGGCGGC-GGCCG-CGGCGgCCGUGGc -3'
miRNA:   3'- -CGUCGUCGuCCGGCaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 176283 0.81 0.124072
Target:  5'- aGCAGCAGCAgacGGgCGUCGGCGUCGUc- -3'
miRNA:   3'- -CGUCGUCGU---CCgGCAGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 222069 0.79 0.177907
Target:  5'- cGCAGCAGCGacCCGUCGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCGUccGGCAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 224014 0.78 0.190911
Target:  5'- gGCAGCGGCGGGCCcggcgGUCggggcgGGCGCCGUc- -3'
miRNA:   3'- -CGUCGUCGUCCGG-----CAG------CCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 70267 0.78 0.195428
Target:  5'- uGCAGCacgGGCAGGCgcagGUCGGCGCCGa-- -3'
miRNA:   3'- -CGUCG---UCGUCCGg---CAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 211381 0.78 0.195428
Target:  5'- --cGUAGUAGGCCGUCaGGCGCCGg-- -3'
miRNA:   3'- cguCGUCGUCCGGCAG-CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 52252 0.78 0.204742
Target:  5'- gGCAGCGGCAGGCgGUUGuuGuuGUGAu -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGCcgCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 134998 0.77 0.219433
Target:  5'- aGCAGgGGCAGGCCGU-GGCGUCGc-- -3'
miRNA:   3'- -CGUCgUCGUCCGGCAgCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 39417 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 239644 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 57160 0.76 0.240412
Target:  5'- cGC-GCGGCAGGUCGUCGGCguGCCGc-- -3'
miRNA:   3'- -CGuCGUCGUCCGGCAGCCG--CGGCacu -5'
14195 5' -61.6 NC_003521.1 + 131051 0.75 0.274985
Target:  5'- gGCGGCGGCGGGCCucUGGaCGCgGUGGc -3'
miRNA:   3'- -CGUCGUCGUCCGGcaGCC-GCGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 123181 0.75 0.287363
Target:  5'- gGCGGCGGCgggggaccguAGGCCGcauaCGGCGCCGgguagGAc -3'
miRNA:   3'- -CGUCGUCG----------UCCGGCa---GCCGCGGCa----CU- -5'
14195 5' -61.6 NC_003521.1 + 76358 0.75 0.287363
Target:  5'- uGCGGCGGC-GGCag-CGGCGaCCGUGAc -3'
miRNA:   3'- -CGUCGUCGuCCGgcaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 122515 0.75 0.293714
Target:  5'- cGCGGCGGCGGGCagGcCGGCgGCgGUGGu -3'
miRNA:   3'- -CGUCGUCGUCCGg-CaGCCG-CGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 104260 0.75 0.300175
Target:  5'- uGCAGCGGCAGcuGCCaGUCGGCGgCGa-- -3'
miRNA:   3'- -CGUCGUCGUC--CGG-CAGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 198210 0.75 0.306745
Target:  5'- gGCGGCGaCGGcGCCGcCGGCGgCCGUGGu -3'
miRNA:   3'- -CGUCGUcGUC-CGGCaGCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 57283 0.75 0.306745
Target:  5'- cCAGCAGCAGGUCGgugcgCGGCGaCUGgugGAu -3'
miRNA:   3'- cGUCGUCGUCCGGCa----GCCGC-GGCa--CU- -5'
14195 5' -61.6 NC_003521.1 + 192311 0.75 0.313424
Target:  5'- cGCGGUAGCGGcGUCGgCGGCaCCGUGGg -3'
miRNA:   3'- -CGUCGUCGUC-CGGCaGCCGcGGCACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.