miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 77 0.68 0.675219
Target:  5'- gGCGuGCGGCGGGCCGgcCGGuCGgaCGUGu -3'
miRNA:   3'- -CGU-CGUCGUCCGGCa-GCC-GCg-GCACu -5'
14195 5' -61.6 NC_003521.1 + 97 0.66 0.793727
Target:  5'- gGCGuGCAgGgAGGCCGaagCGGCgGCCG-GAg -3'
miRNA:   3'- -CGU-CGU-CgUCCGGCa--GCCG-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 1625 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 5520 0.68 0.63406
Target:  5'- aGUAGCAGCAGcgacggugacggcaGCCGgcgCGGCcGCCGc-- -3'
miRNA:   3'- -CGUCGUCGUC--------------CGGCa--GCCG-CGGCacu -5'
14195 5' -61.6 NC_003521.1 + 7808 0.7 0.56061
Target:  5'- aGCGGCAGCuggacggcgucaAGGCCaucCGGCGCCa--- -3'
miRNA:   3'- -CGUCGUCG------------UCCGGca-GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 7988 0.71 0.50411
Target:  5'- cGCGGCGGCGGGggagguaCCGgggCaGCGCCGUa- -3'
miRNA:   3'- -CGUCGUCGUCC-------GGCa--GcCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 13463 0.71 0.505017
Target:  5'- aGCGGCGGUAGcGCCGUCgacggucugGGCGacggggaaCGUGGg -3'
miRNA:   3'- -CGUCGUCGUC-CGGCAG---------CCGCg-------GCACU- -5'
14195 5' -61.6 NC_003521.1 + 13919 0.68 0.665677
Target:  5'- gGCcGCGG-AGGCCGcgcUGGcCGCCGUGGu -3'
miRNA:   3'- -CGuCGUCgUCCGGCa--GCC-GCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 13993 0.71 0.505017
Target:  5'- cGCGGCGGCGGGCgaGgaccccaUGGCGCUGUa- -3'
miRNA:   3'- -CGUCGUCGUCCGg-Ca------GCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 14793 0.69 0.570056
Target:  5'- uGguGCuGCuGGaCUGguUCGGCGCCGUGu -3'
miRNA:   3'- -CguCGuCGuCC-GGC--AGCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 15231 0.66 0.758808
Target:  5'- gGCGGCcgAGCgcgAGGCCGcCGaGCGCCa--- -3'
miRNA:   3'- -CGUCG--UCG---UCCGGCaGC-CGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 16261 0.69 0.617751
Target:  5'- uGCGGCuGCGcuGCCGcugguuccugcUgGGCGCCGUGGg -3'
miRNA:   3'- -CGUCGuCGUc-CGGC-----------AgCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 16768 0.67 0.732479
Target:  5'- cGCcauGCAGCAGGUCGguuuucagaugcugcCGGCGCCc--- -3'
miRNA:   3'- -CGu--CGUCGUCCGGCa--------------GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 16980 0.68 0.625424
Target:  5'- cGCAGCAGCA-GCCGcagggacagcaGGCGCCcgcgGUGGc -3'
miRNA:   3'- -CGUCGUCGUcCGGCag---------CCGCGG----CACU- -5'
14195 5' -61.6 NC_003521.1 + 17154 0.68 0.636938
Target:  5'- aGCAGCGGCgcgAGGCCGa-GGCGCagCGcUGGc -3'
miRNA:   3'- -CGUCGUCG---UCCGGCagCCGCG--GC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 17458 0.66 0.792877
Target:  5'- cGCGGCAGCgcucggAGGagagacgacggcaCCGguagCGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCG------UCC-------------GGCa---GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 18733 0.69 0.617751
Target:  5'- gGCGGCGGCGaucguggcGGCgGU-GGCGCCGa-- -3'
miRNA:   3'- -CGUCGUCGU--------CCGgCAgCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 19120 0.66 0.758808
Target:  5'- cGCgGGUGGCGGGCCGcCGGUGUaccaGUcGGa -3'
miRNA:   3'- -CG-UCGUCGUCCGGCaGCCGCGg---CA-CU- -5'
14195 5' -61.6 NC_003521.1 + 19862 0.7 0.56061
Target:  5'- aGCuGCAGCGcucccugcugacGGCCGcgUCGGCGCUGa-- -3'
miRNA:   3'- -CGuCGUCGU------------CCGGC--AGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 19953 0.66 0.785172
Target:  5'- cGUGGUgAGguGGCCGggcuggCGGUGaUCGUGAc -3'
miRNA:   3'- -CGUCG-UCguCCGGCa-----GCCGC-GGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.