miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 223388 0.72 0.425725
Target:  5'- cGCGGCGccccgacGCGGGCCGUgUGGCGCCc--- -3'
miRNA:   3'- -CGUCGU-------CGUCCGGCA-GCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 63227 0.73 0.363241
Target:  5'- gGCAGCGGaacGGCCGgaaccggCGGCGCCGc-- -3'
miRNA:   3'- -CGUCGUCgu-CCGGCa------GCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 101854 0.73 0.378447
Target:  5'- aGCGGCAGCAGGCgG-CGGUacaugaaguaGCCGUc- -3'
miRNA:   3'- -CGUCGUCGUCCGgCaGCCG----------CGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 64347 0.73 0.386209
Target:  5'- cCAGCuGCAGGCCcUgGGCGCCcUGGa -3'
miRNA:   3'- cGUCGuCGUCCGGcAgCCGCGGcACU- -5'
14195 5' -61.6 NC_003521.1 + 127546 0.73 0.386209
Target:  5'- gGCGGCAGCAcGCCGUCGGC-CagGUGc -3'
miRNA:   3'- -CGUCGUCGUcCGGCAGCCGcGg-CACu -5'
14195 5' -61.6 NC_003521.1 + 87870 0.73 0.394076
Target:  5'- cGCAgGCgcuGGcCAGGCCGUUGGCGaaGUGGa -3'
miRNA:   3'- -CGU-CG---UC-GUCCGGCAGCCGCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 201852 0.73 0.394076
Target:  5'- uGCuGCGGguGGCUGUUucugGGCGUCGUGc -3'
miRNA:   3'- -CGuCGUCguCCGGCAG----CCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 188045 0.72 0.418287
Target:  5'- cGguGCAGCGGGuuGUCGaUGCCGcGGu -3'
miRNA:   3'- -CguCGUCGUCCggCAGCcGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 85410 0.72 0.418287
Target:  5'- cCGGCAGCAGGCCucCGGUGCCc--- -3'
miRNA:   3'- cGUCGUCGUCCGGcaGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 218720 0.74 0.341237
Target:  5'- gGCGGCGGCGGGCgaGaagCGGCGUCGgGAc -3'
miRNA:   3'- -CGUCGUCGUCCGg-Ca--GCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 153597 0.74 0.320213
Target:  5'- uGCAGCAGCAGcGCCagGUUGGCGCUc--- -3'
miRNA:   3'- -CGUCGUCGUC-CGG--CAGCCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 192311 0.75 0.313424
Target:  5'- cGCGGUAGCGGcGUCGgCGGCaCCGUGGg -3'
miRNA:   3'- -CGUCGUCGUC-CGGCaGCCGcGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 70267 0.78 0.195428
Target:  5'- uGCAGCacgGGCAGGCgcagGUCGGCGCCGa-- -3'
miRNA:   3'- -CGUCG---UCGUCCGg---CAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 211381 0.78 0.195428
Target:  5'- --cGUAGUAGGCCGUCaGGCGCCGg-- -3'
miRNA:   3'- cguCGUCGUCCGGCAG-CCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 52252 0.78 0.204742
Target:  5'- gGCAGCGGCAGGCgGUUGuuGuuGUGAu -3'
miRNA:   3'- -CGUCGUCGUCCGgCAGCcgCggCACU- -5'
14195 5' -61.6 NC_003521.1 + 134998 0.77 0.219433
Target:  5'- aGCAGgGGCAGGCCGU-GGCGUCGc-- -3'
miRNA:   3'- -CGUCgUCGUCCGGCAgCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 239644 0.76 0.239867
Target:  5'- -uGGCA-CAGGCCGUccagucccguaggCGGCGCCGUGGc -3'
miRNA:   3'- cgUCGUcGUCCGGCA-------------GCCGCGGCACU- -5'
14195 5' -61.6 NC_003521.1 + 57160 0.76 0.240412
Target:  5'- cGC-GCGGCAGGUCGUCGGCguGCCGc-- -3'
miRNA:   3'- -CGuCGUCGUCCGGCAGCCG--CGGCacu -5'
14195 5' -61.6 NC_003521.1 + 131051 0.75 0.274985
Target:  5'- gGCGGCGGCGGGCCucUGGaCGCgGUGGc -3'
miRNA:   3'- -CGUCGUCGUCCGGcaGCC-GCGgCACU- -5'
14195 5' -61.6 NC_003521.1 + 57283 0.75 0.306745
Target:  5'- cCAGCAGCAGGUCGgugcgCGGCGaCUGgugGAu -3'
miRNA:   3'- cGUCGUCGUCCGGCa----GCCGC-GGCa--CU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.