miRNA display CGI


Results 21 - 40 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14195 5' -61.6 NC_003521.1 + 53169 0.66 0.785172
Target:  5'- aCGGCGGCgAGGagGUCGGCgacGCCGUcGGu -3'
miRNA:   3'- cGUCGUCG-UCCggCAGCCG---CGGCA-CU- -5'
14195 5' -61.6 NC_003521.1 + 120237 0.66 0.785172
Target:  5'- gGCAGgAGCcGGCgG-CcGCGCCGUGc -3'
miRNA:   3'- -CGUCgUCGuCCGgCaGcCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 91925 0.66 0.785172
Target:  5'- cGCGGCGGCGcuCC-UCGGCGUCGg-- -3'
miRNA:   3'- -CGUCGUCGUccGGcAGCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 109344 0.66 0.785172
Target:  5'- gGCAGCAGCcggcgcaggAGGCCGaCGaG-GCCGaGAg -3'
miRNA:   3'- -CGUCGUCG---------UCCGGCaGC-CgCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 234850 0.66 0.785172
Target:  5'- aUAGC-GUGGGCa-UCGGCGUCGUGu -3'
miRNA:   3'- cGUCGuCGUCCGgcAGCCGCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 116787 0.66 0.785172
Target:  5'- cGCGGCAcGCuGGCCGUCuacgGCCGcGAc -3'
miRNA:   3'- -CGUCGU-CGuCCGGCAGccg-CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 226373 0.66 0.785172
Target:  5'- aGCGGCGGCugacGCCGcCGcaGgGCCGUGu -3'
miRNA:   3'- -CGUCGUCGuc--CGGCaGC--CgCGGCACu -5'
14195 5' -61.6 NC_003521.1 + 186593 0.66 0.785172
Target:  5'- gGUAGCAGCcgcccGGCaGUCGGUacuGCCG-GAc -3'
miRNA:   3'- -CGUCGUCGu----CCGgCAGCCG---CGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 166420 0.66 0.776495
Target:  5'- cGCGGCA-CAGGUCGUCcaCGCaCGUGu -3'
miRNA:   3'- -CGUCGUcGUCCGGCAGccGCG-GCACu -5'
14195 5' -61.6 NC_003521.1 + 91999 0.66 0.776495
Target:  5'- uCGGCcgagGGCAGGCgGUCGccGCGCaCGaUGAa -3'
miRNA:   3'- cGUCG----UCGUCCGgCAGC--CGCG-GC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 124165 0.66 0.776495
Target:  5'- aGCGGCGGCuggagagcgagAGGCCGgCGuaGCuGCCGcUGAg -3'
miRNA:   3'- -CGUCGUCG-----------UCCGGCaGC--CG-CGGC-ACU- -5'
14195 5' -61.6 NC_003521.1 + 36967 0.66 0.776495
Target:  5'- cGCAGCggAGCGGGUgcUCGGCGgCGa-- -3'
miRNA:   3'- -CGUCG--UCGUCCGgcAGCCGCgGCacu -5'
14195 5' -61.6 NC_003521.1 + 58811 0.66 0.776495
Target:  5'- aCGGUcucgAGCAGGCagcgcgUGGCGgCCGUGAc -3'
miRNA:   3'- cGUCG----UCGUCCGgca---GCCGC-GGCACU- -5'
14195 5' -61.6 NC_003521.1 + 96649 0.66 0.776495
Target:  5'- aGCGcGCGGCAGGC----GGCGCCGg-- -3'
miRNA:   3'- -CGU-CGUCGUCCGgcagCCGCGGCacu -5'
14195 5' -61.6 NC_003521.1 + 43841 0.66 0.776495
Target:  5'- cCGGCcGCGGGcCCGUCacaGGCGCCc--- -3'
miRNA:   3'- cGUCGuCGUCC-GGCAG---CCGCGGcacu -5'
14195 5' -61.6 NC_003521.1 + 132470 0.66 0.776495
Target:  5'- cCGGuCAGCcGucuucggagaccGCCGUCGGCGCggaCGUGAu -3'
miRNA:   3'- cGUC-GUCGuC------------CGGCAGCCGCG---GCACU- -5'
14195 5' -61.6 NC_003521.1 + 180825 0.66 0.767704
Target:  5'- cGCuGCuGCAGGCUGcCGGUgaagaGCCGg-- -3'
miRNA:   3'- -CGuCGuCGUCCGGCaGCCG-----CGGCacu -5'
14195 5' -61.6 NC_003521.1 + 168650 0.66 0.767704
Target:  5'- aCGGUcaucgaGGCAuGCCGaCGGCGCCG-GAg -3'
miRNA:   3'- cGUCG------UCGUcCGGCaGCCGCGGCaCU- -5'
14195 5' -61.6 NC_003521.1 + 53512 0.66 0.767704
Target:  5'- uGCGGCGucGCAgcGGCCGaUGGUGCUGUc- -3'
miRNA:   3'- -CGUCGU--CGU--CCGGCaGCCGCGGCAcu -5'
14195 5' -61.6 NC_003521.1 + 220936 0.66 0.767704
Target:  5'- aCAGCAGCAGGa--UCaGCGCCGa-- -3'
miRNA:   3'- cGUCGUCGUCCggcAGcCGCGGCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.