miRNA display CGI


Results 41 - 60 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 199379 0.66 0.892636
Target:  5'- cGUGGUguaGACGGCGGCGGgG-GuCGAg -3'
miRNA:   3'- uCGCCG---UUGUCGUCGCCgCaCuGCUg -5'
14197 3' -58.5 NC_003521.1 + 221801 0.66 0.88611
Target:  5'- cGGCgGGCAugGGCuccGuCGGCGgGGCGGg -3'
miRNA:   3'- -UCG-CCGUugUCGu--C-GCCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 116359 0.66 0.865299
Target:  5'- cGCGaGC-GCGGCGGCGaacGCGUGccgccGCGGCc -3'
miRNA:   3'- uCGC-CGuUGUCGUCGC---CGCAC-----UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 84759 0.66 0.879376
Target:  5'- --gGGC-GCGGCGGCGGCGacguUGuuGGCa -3'
miRNA:   3'- ucgCCGuUGUCGUCGCCGC----ACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 83889 0.66 0.872437
Target:  5'- gAGCGcGCGACAaauGUA-CGGgGUGAUGGCc -3'
miRNA:   3'- -UCGC-CGUUGU---CGUcGCCgCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 87065 0.66 0.892636
Target:  5'- cAGCGGguGgaaGGCGGCGGCGUaGgGGu -3'
miRNA:   3'- -UCGCCguUg--UCGUCGCCGCAcUgCUg -5'
14197 3' -58.5 NC_003521.1 + 138317 0.66 0.864574
Target:  5'- cGUGGcCGACAuggaccuGCGGCuGCGcGACGGCg -3'
miRNA:   3'- uCGCC-GUUGU-------CGUCGcCGCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 77017 0.66 0.872437
Target:  5'- cAGgGGCAGCAuGCgguugaggccGGCGGUgGUGGCGcCg -3'
miRNA:   3'- -UCgCCGUUGU-CG----------UCGCCG-CACUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 6057 0.66 0.879376
Target:  5'- cAGCGGCccc-GCAG-GGCGUGAUcACg -3'
miRNA:   3'- -UCGCCGuuguCGUCgCCGCACUGcUG- -5'
14197 3' -58.5 NC_003521.1 + 38231 0.66 0.892636
Target:  5'- gGGCGGCcuCGGCgGGCGGgGcgGA-GACg -3'
miRNA:   3'- -UCGCCGuuGUCG-UCGCCgCa-CUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 37581 0.66 0.872437
Target:  5'- cGCaGCAcCAGCAGCacGGUGUucuuucugGGCGACu -3'
miRNA:   3'- uCGcCGUuGUCGUCG--CCGCA--------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 105018 0.66 0.872437
Target:  5'- gAGCGGgAACGGgAGCGcuuCGagGACGGCc -3'
miRNA:   3'- -UCGCCgUUGUCgUCGCc--GCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 44906 0.66 0.892636
Target:  5'- cAGaCGGC----GCGGCGGCGagGACGAa -3'
miRNA:   3'- -UC-GCCGuuguCGUCGCCGCa-CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 50489 0.67 0.818579
Target:  5'- cGCGuGCcACAGCgugucGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CGuUGUCG-----UCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 108546 0.67 0.818579
Target:  5'- uGGCGGCAcACGGUcaagaGGuUGGCGUuGCGGCc -3'
miRNA:   3'- -UCGCCGU-UGUCG-----UC-GCCGCAcUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74188 0.67 0.857966
Target:  5'- cGCGGCGccCGGCGcGCGGCccGACGcCg -3'
miRNA:   3'- uCGCCGUu-GUCGU-CGCCGcaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 119134 0.67 0.818579
Target:  5'- cGCGGCAGCAGaacCAGUGGaagGAgccCGACg -3'
miRNA:   3'- uCGCCGUUGUC---GUCGCCgcaCU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 131721 0.67 0.857966
Target:  5'- uGGUGuGCAACAGCAaucgucGCuGGaCGUGcACGGCc -3'
miRNA:   3'- -UCGC-CGUUGUCGU------CG-CC-GCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 50742 0.67 0.826798
Target:  5'- cGuCGGC-GCAGCAGCGGgccagaacguaCGUGAaGACc -3'
miRNA:   3'- uC-GCCGuUGUCGUCGCC-----------GCACUgCUG- -5'
14197 3' -58.5 NC_003521.1 + 166766 0.67 0.857966
Target:  5'- cAGCGGCgcGugAGCucgggacaGGCGGgGUcgGACGAUg -3'
miRNA:   3'- -UCGCCG--UugUCG--------UCGCCgCA--CUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.