miRNA display CGI


Results 61 - 80 of 430 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 74897 0.67 0.842737
Target:  5'- uGCGcGaGACGGUGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CgUUGUCGUCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 70926 0.67 0.850443
Target:  5'- cAGCGccaGCAggguccACAGCAGCGaGCGgaGCGGCu -3'
miRNA:   3'- -UCGC---CGU------UGUCGUCGC-CGCacUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 172315 0.67 0.857966
Target:  5'- cGGUGGCGccaggccggucGCGGCGGacgGGUGaggGGCGGCg -3'
miRNA:   3'- -UCGCCGU-----------UGUCGUCg--CCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 106595 0.67 0.843515
Target:  5'- gGGCGGCGcggGCAGCuacucggccaAGCGGCaccagcgcuucuccGACGACc -3'
miRNA:   3'- -UCGCCGU---UGUCG----------UCGCCGca------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 203993 0.67 0.850443
Target:  5'- -cCGGC-ACAGCAGCGccggcccguggcGCGUGAucaCGGCc -3'
miRNA:   3'- ucGCCGuUGUCGUCGC------------CGCACU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 204621 0.67 0.857222
Target:  5'- uGUGGCGACAGCguuugagccgcucGGCcaGGUGcGugGGCa -3'
miRNA:   3'- uCGCCGUUGUCG-------------UCG--CCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 131721 0.67 0.857966
Target:  5'- uGGUGuGCAACAGCAaucgucGCuGGaCGUGcACGGCc -3'
miRNA:   3'- -UCGC-CGUUGUCGU------CG-CC-GCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 152046 0.67 0.857966
Target:  5'- cAGCGGUGcuucacccGCAGguccgucagcuuCAGCuGCGUGAUGGCg -3'
miRNA:   3'- -UCGCCGU--------UGUC------------GUCGcCGCACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 41997 0.67 0.826798
Target:  5'- aGGUcGCAGCAGCAacaCGGCG-GcACGACa -3'
miRNA:   3'- -UCGcCGUUGUCGUc--GCCGCaC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 67861 0.67 0.834853
Target:  5'- -aCGGCAGCGGUuGgGGCGgaacgggaggaGACGACu -3'
miRNA:   3'- ucGCCGUUGUCGuCgCCGCa----------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 37382 0.67 0.857966
Target:  5'- uGCGGUguucgaGGCGGCGGgGGCGcccgggccuUGuGCGACg -3'
miRNA:   3'- uCGCCG------UUGUCGUCgCCGC---------AC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 183783 0.67 0.857966
Target:  5'- gGGCaGGaCGAguGCcugGGCGGCGUGuucauccgcgugGCGGCg -3'
miRNA:   3'- -UCG-CC-GUUguCG---UCGCCGCAC------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 104089 0.67 0.860922
Target:  5'- cGCGGCAggacGCGGaaGGCGGCGcgcugccaguccucGGCGGCg -3'
miRNA:   3'- uCGCCGU----UGUCg-UCGCCGCa-------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 113883 0.67 0.857966
Target:  5'- cGGCGGCAcagcgACAGCAGguaGGCGagcugcUGAgCGAg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCg--CCGC------ACU-GCUg -5'
14197 3' -58.5 NC_003521.1 + 77221 0.67 0.857966
Target:  5'- gAGCGGagAGCAGCcuaCGGgG-GACGACa -3'
miRNA:   3'- -UCGCCg-UUGUCGuc-GCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 215658 0.67 0.818579
Target:  5'- cGCGGCGGgAGCAGCGaaaGCGcGACc-- -3'
miRNA:   3'- uCGCCGUUgUCGUCGC---CGCaCUGcug -5'
14197 3' -58.5 NC_003521.1 + 57276 0.67 0.826798
Target:  5'- aAGCGaccCAGCAGCAGguCGGUGcgcGGCGACu -3'
miRNA:   3'- -UCGCc--GUUGUCGUC--GCCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 112078 0.67 0.842737
Target:  5'- cGGUGGgGAuCAGgGGCGGC-UGGCGGg -3'
miRNA:   3'- -UCGCCgUU-GUCgUCGCCGcACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 68423 0.67 0.857966
Target:  5'- cGCGGCGACGGCuccgccGGCGccccucaaccGCGUGcCGGu -3'
miRNA:   3'- uCGCCGUUGUCG------UCGC----------CGCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 50888 0.67 0.853474
Target:  5'- cGGCGGCccGCAcgaugaugauaaaucGCGGUGGCGgagGugGAg -3'
miRNA:   3'- -UCGCCGu-UGU---------------CGUCGCCGCa--CugCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.