miRNA display CGI


Results 81 - 100 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 172315 0.67 0.857966
Target:  5'- cGGUGGCGccaggccggucGCGGCGGacgGGUGaggGGCGGCg -3'
miRNA:   3'- -UCGCCGU-----------UGUCGUCg--CCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 104089 0.67 0.860922
Target:  5'- cGCGGCAggacGCGGaaGGCGGCGcgcugccaguccucGGCGGCg -3'
miRNA:   3'- uCGCCGU----UGUCg-UCGCCGCa-------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 74188 0.67 0.857966
Target:  5'- cGCGGCGccCGGCGcGCGGCccGACGcCg -3'
miRNA:   3'- uCGCCGUu-GUCGU-CGCCGcaCUGCuG- -5'
14197 3' -58.5 NC_003521.1 + 37382 0.67 0.857966
Target:  5'- uGCGGUguucgaGGCGGCGGgGGCGcccgggccuUGuGCGACg -3'
miRNA:   3'- uCGCCG------UUGUCGUCgCCGC---------AC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 204621 0.67 0.857222
Target:  5'- uGUGGCGACAGCguuugagccgcucGGCcaGGUGcGugGGCa -3'
miRNA:   3'- uCGCCGUUGUCG-------------UCG--CCGCaCugCUG- -5'
14197 3' -58.5 NC_003521.1 + 109872 0.67 0.850443
Target:  5'- gGGCGGCGGCGGggccacCAGUaacuGCGUG-CGACc -3'
miRNA:   3'- -UCGCCGUUGUC------GUCGc---CGCACuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 148635 0.67 0.818579
Target:  5'- gGGCGGCGaaaaACGGCcccgAGCucGGCGggGAUGGCc -3'
miRNA:   3'- -UCGCCGU----UGUCG----UCG--CCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 128980 0.67 0.818579
Target:  5'- cGGCGGCGcuuugcGCAGCAGCGucugcaagaaGC-UGugGAUc -3'
miRNA:   3'- -UCGCCGU------UGUCGUCGC----------CGcACugCUG- -5'
14197 3' -58.5 NC_003521.1 + 147403 0.67 0.834853
Target:  5'- uGGCGGaucGC-GUGGCGGUGagGACGACc -3'
miRNA:   3'- -UCGCCgu-UGuCGUCGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 170311 0.67 0.826798
Target:  5'- aGGCGGUcacguCGGUguuuaAGCGGCugGUGAUGACc -3'
miRNA:   3'- -UCGCCGuu---GUCG-----UCGCCG--CACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 3197 0.67 0.818579
Target:  5'- aAG-GGCAACAGCaacccgAGCGGUGUGuGCGu- -3'
miRNA:   3'- -UCgCCGUUGUCG------UCGCCGCAC-UGCug -5'
14197 3' -58.5 NC_003521.1 + 149833 0.67 0.818579
Target:  5'- cAGCuGCAACAGCAGCaucGGCGUu-CGcCg -3'
miRNA:   3'- -UCGcCGUUGUCGUCG---CCGCAcuGCuG- -5'
14197 3' -58.5 NC_003521.1 + 77221 0.67 0.857966
Target:  5'- gAGCGGagAGCAGCcuaCGGgG-GACGACa -3'
miRNA:   3'- -UCGCCg-UUGUCGuc-GCCgCaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 203993 0.67 0.850443
Target:  5'- -cCGGC-ACAGCAGCGccggcccguggcGCGUGAucaCGGCc -3'
miRNA:   3'- ucGCCGuUGUCGUCGC------------CGCACU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 119134 0.67 0.818579
Target:  5'- cGCGGCAGCAGaacCAGUGGaagGAgccCGACg -3'
miRNA:   3'- uCGCCGUUGUC---GUCGCCgcaCU---GCUG- -5'
14197 3' -58.5 NC_003521.1 + 113883 0.67 0.857966
Target:  5'- cGGCGGCAcagcgACAGCAGguaGGCGagcugcUGAgCGAg -3'
miRNA:   3'- -UCGCCGU-----UGUCGUCg--CCGC------ACU-GCUg -5'
14197 3' -58.5 NC_003521.1 + 50489 0.67 0.818579
Target:  5'- cGCGuGCcACAGCgugucGGCGGCG-GugGAg -3'
miRNA:   3'- uCGC-CGuUGUCG-----UCGCCGCaCugCUg -5'
14197 3' -58.5 NC_003521.1 + 166766 0.67 0.857966
Target:  5'- cAGCGGCgcGugAGCucgggacaGGCGGgGUcgGACGAUg -3'
miRNA:   3'- -UCGCCG--UugUCG--------UCGCCgCA--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 123184 0.68 0.810202
Target:  5'- cGCGGC-GCAGUcGCaGGCG-GaACGACa -3'
miRNA:   3'- uCGCCGuUGUCGuCG-CCGCaC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 115827 0.68 0.810202
Target:  5'- gGGUGGCu-CAGCAGgcgcuggcucaGGCG-GGCGGCg -3'
miRNA:   3'- -UCGCCGuuGUCGUCg----------CCGCaCUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.