miRNA display CGI


Results 101 - 120 of 430 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14197 3' -58.5 NC_003521.1 + 53398 0.68 0.801676
Target:  5'- cGCGGCgAGCAGgGGaUGGCGcGuCGGCa -3'
miRNA:   3'- uCGCCG-UUGUCgUC-GCCGCaCuGCUG- -5'
14197 3' -58.5 NC_003521.1 + 196938 0.68 0.801676
Target:  5'- -cCGGCAGCAcCGGUaGCGUGgGCGACg -3'
miRNA:   3'- ucGCCGUUGUcGUCGcCGCAC-UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 198787 0.68 0.801676
Target:  5'- aGGUgGGUAGCAGCugcGUGGUGccGGCGGCg -3'
miRNA:   3'- -UCG-CCGUUGUCGu--CGCCGCa-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 97068 0.68 0.801676
Target:  5'- aAGUGGCAgacGCGGCAuCGGUGguugaggaacuUGAUGGCg -3'
miRNA:   3'- -UCGCCGU---UGUCGUcGCCGC-----------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 98316 0.68 0.805104
Target:  5'- aAGUGGUGGCGGCGGCcacgacGGUGguugcgcuggcagaGACGACg -3'
miRNA:   3'- -UCGCCGUUGUCGUCG------CCGCa-------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 44373 0.68 0.810202
Target:  5'- cAGCGGagguucgcGCGGCAGcCGGCcgacccgGGCGACa -3'
miRNA:   3'- -UCGCCgu------UGUCGUC-GCCGca-----CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 107325 0.68 0.810202
Target:  5'- gGGUugGGCcccGCAGCAGCGGCGccaggUGAuccuCGACc -3'
miRNA:   3'- -UCG--CCGu--UGUCGUCGCCGC-----ACU----GCUG- -5'
14197 3' -58.5 NC_003521.1 + 111241 0.68 0.784204
Target:  5'- cGCGGC--CGGC-GCGGCGcGGCGGa -3'
miRNA:   3'- uCGCCGuuGUCGuCGCCGCaCUGCUg -5'
14197 3' -58.5 NC_003521.1 + 42583 0.68 0.801676
Target:  5'- uGCGGCGuCAGCcagcuauugauAGCGcgacaGCGUGACGGu -3'
miRNA:   3'- uCGCCGUuGUCG-----------UCGC-----CGCACUGCUg -5'
14197 3' -58.5 NC_003521.1 + 140348 0.68 0.781538
Target:  5'- uGGCGGCggUAGCAaCGGcCGUcaccacucuucuucGGCGGCc -3'
miRNA:   3'- -UCGCCGuuGUCGUcGCC-GCA--------------CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 148441 0.68 0.801676
Target:  5'- cGGCGGCucCAGgGGUGGCcggugcgugcUGAUGACg -3'
miRNA:   3'- -UCGCCGuuGUCgUCGCCGc---------ACUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 153116 0.68 0.79388
Target:  5'- cGCGcGCGACGGCAGCaGGCGgcuuugguccaccaGCGAg -3'
miRNA:   3'- uCGC-CGUUGUCGUCG-CCGCac------------UGCUg -5'
14197 3' -58.5 NC_003521.1 + 239260 0.68 0.793007
Target:  5'- cAGCGaCGGCGGguGUGGCGccgaGGCGAa -3'
miRNA:   3'- -UCGCcGUUGUCguCGCCGCa---CUGCUg -5'
14197 3' -58.5 NC_003521.1 + 100066 0.68 0.79038
Target:  5'- uGGCGGauguGCAGCAGguaguCGGUGUGcaugagcucgucguGCGACa -3'
miRNA:   3'- -UCGCCgu--UGUCGUC-----GCCGCAC--------------UGCUG- -5'
14197 3' -58.5 NC_003521.1 + 127395 0.68 0.766225
Target:  5'- gGGCGGCcACAgGCGGUGGuCGUGcaGCG-Cg -3'
miRNA:   3'- -UCGCCGuUGU-CGUCGCC-GCAC--UGCuG- -5'
14197 3' -58.5 NC_003521.1 + 142649 0.68 0.769858
Target:  5'- cGCGGCcuCAGCGGuCGGCgcagcgccgucagcaGcGACGGCg -3'
miRNA:   3'- uCGCCGuuGUCGUC-GCCG---------------CaCUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 136615 0.68 0.787741
Target:  5'- cGCugGGCuGCAGCAGCacguaaucggccacgGGCGcggGGCGGCg -3'
miRNA:   3'- uCG--CCGuUGUCGUCG---------------CCGCa--CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 97277 0.68 0.784204
Target:  5'- uGGCGGCuGCugcucgucgccGGCGGCGcGCGUG-CGGa -3'
miRNA:   3'- -UCGCCGuUG-----------UCGUCGC-CGCACuGCUg -5'
14197 3' -58.5 NC_003521.1 + 7644 0.68 0.784204
Target:  5'- cGaCGGUAACGGCGGCcGCcacGGCGGCg -3'
miRNA:   3'- uC-GCCGUUGUCGUCGcCGca-CUGCUG- -5'
14197 3' -58.5 NC_003521.1 + 90141 0.68 0.801676
Target:  5'- cAGCaGCAgcccaGCAGCAGCGGCGccGCcGCc -3'
miRNA:   3'- -UCGcCGU-----UGUCGUCGCCGCacUGcUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.